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2,6 - 二氨基 - 4 - 氯嘧啶 - 1 - 鎓5 - 氯水杨酸酯和双 -(2,6 - 二氨基 - 4 - 氯嘧啶 - 1 - 鎓)萘 - 1,5 - 二磺酸盐中的超分子相互作用

Supra-molecular inter-actions in 2,6-di-amino-4-chloro-pyrimidin-1-ium 5-chloro-salicylate and bis-(2,6-di-amino-4-chloro-pyrimidin-1-ium) naphthalene-1,5-di-sulfonate.

作者信息

Swinton Darious Robert, Thomas Muthiah Packianathan, Perdih Franc

机构信息

School of Chemistry, Bharathidasan University, Tiruchirappalli 620 024, Tamilnadu, India.

Faculty of Chemistry and Chemical Technology, University of Ljubljana, Večna, pot 113, PO Box 537, SI-1000 Ljubljana, Slovenia.

出版信息

Acta Crystallogr E Crystallogr Commun. 2018 Jan 26;74(Pt 2):237-241. doi: 10.1107/S2056989018001196. eCollection 2018 Feb 1.

Abstract

The crystals of two new salts, 2,6-di-amino-4-chloro-pyrimidin-1-ium 5-chloro-salicylate, CHClN·CHClO, (I), and bis-(2,6-di-amino-4-chloro-pyrimidin-1-ium) naphthalene-1,5-di-sulfonate, 2CHClN·CHOS, (II), have been synthesized and characterized by single-crystal X-ray diffraction. In both compounds, the N atom of the pyrimidine group in between the amino substituents is protonated and the pyrimidinium cation forms a pair of N-H⋯O hydrogen bonds with the carboxyl-ate/sulfonate ion, leading to a robust (8) motif (supra-molecular heterosynthon). In compound (I), a self-complementary base pairing involving the other pyrimidinium ring nitro-gen atom and one of the amino groups a pair of N-H⋯N hydrogen bonds [(8) homosynthon] is also present. In compound (II), the crystallographic inversion centre coincides with the inversion centre of the naphthalene-1,5-di-sulfonate ion and all the sulfonate O atoms are hydrogen-bond acceptors, generating fused-ring motifs and a quadruple array. A halogen-bond (Cl⋯Cl) inter-action is present in (I) with a distance and angle of 3.3505 (12) Å and 151.37 (10)°, respectively. In addition, a C-Cl⋯π inter-action and a π-π inter-action in (I) and a π-π inter-action in (II) further stabilize these crystal structures.

摘要

两种新盐,2,6 - 二氨基 - 4 - 氯嘧啶 - 1 - 鎓5 - 氯水杨酸盐(CHClN·CHClO,(I))和双(2,6 - 二氨基 - 4 - 氯嘧啶 - 1 - 鎓)萘 - 1,5 - 二磺酸盐(2CHClN·CHOS,(II))的晶体已通过单晶X射线衍射进行了合成和表征。在这两种化合物中,氨基取代基之间嘧啶基团的N原子被质子化,嘧啶鎓阳离子与羧酸根/磺酸根离子形成一对N - H⋯O氢键,导致形成一个稳定的(8) motif(超分子异合成子)。在化合物(I)中,还存在涉及另一个嘧啶鎓环氮原子和一个氨基的自互补碱基配对——一对N - H⋯N氢键[(8) 同合成子]。在化合物(II)中,晶体学反演中心与萘 - 1,5 - 二磺酸盐离子的反演中心重合,所有磺酸根O原子都是氢键受体,产生稠环motif和四重阵列。在(I)中存在卤键(Cl⋯Cl)相互作用,距离和角度分别为3.3505 (12) Å和151.37 (10)°。此外,(I)中的C - Cl⋯π相互作用和π - π相互作用以及(II)中的π - π相互作用进一步稳定了这些晶体结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f871/5956345/85972bfa79c9/e-74-00237-fig1.jpg

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