Institute for Catalysis, Hokkaido University , Kita 21, Nishi 10 , Kita-ku, Sapporo 001-0021 , Japan.
Department of Theoretical and Computational Molecular Science , Institute for Molecular Science , 38 Nishigo-Naka, Myodaiji , Okazaki 444-8585 , Japan.
J Chem Theory Comput. 2018 Jul 10;14(7):3643-3655. doi: 10.1021/acs.jctc.7b01089. Epub 2018 Jun 25.
A triple-layer QM/sQM/MM method was developed for accurately describing the excited-state molecular interactions between chromophore and the molecular environment (Hasegawa, J.; Yanai, K.; Ishimura, K. ChemPhysChem 2015, 16, 305). A first-order-interaction space (FOIS) was defined for the interactions between QM and secondary QM (sQM) regions. Moreover, configuration interaction singles (CIS) and its second-order perturbation theory (PT2) calculations were performed within this space. In this study, numerical implementation of this FOISPT2 method significantly reduced the computing time, which realized application to solvatochromic systems, p-coumaric acid in neutral ( p-CA) and anionic forms in aqueous solution, retinal Schiff base in methanol (MeOH) solution, and bacteriorhodopsin (bR). The results were consistent with the experimentally observed absorption spectra of the applied systems. The QM/sQM/MM result for the opsin shift was in better agreement to the experimental result than that of the ordinary QM/MM. A decomposition analysis was performed for the excited-state molecular interactions. Among the electronic interactions, charge-transfer (CT) effect, excitonic interaction, and dispersion interaction showed significant large contributions, while the electronic polarization effect presented only minor contribution. Furthermore, the result was analyzed to determine the contributions from each environmental molecule and was interpreted based on the distance of the molecules from the π system in the chromophores.
发展了一种三层 QM/sQM/MM 方法,用于准确描述发色团与分子环境之间的激发态分子相互作用(Hasegawa, J.; Yanai, K.; Ishimura, K. ChemPhysChem 2015, 16, 305)。为 QM 和二级 QM(sQM)区域之间的相互作用定义了一阶相互作用空间(FOIS)。此外,在该空间内进行了组态相互作用单重态(CIS)及其二阶微扰理论(PT2)计算。在这项研究中,这种 FOISPT2 方法的数值实现显著减少了计算时间,从而实现了对溶剂化变色系统、中性(p-CA)和阴离子形式的对香豆酸在水溶液、甲醇(MeOH)溶液中的视黄醛席夫碱和菌紫质(bR)的应用。结果与所应用系统的实验观察到的吸收光谱一致。与普通的 QM/MM 相比,QM/sQM/MM 对视紫红质位移的结果更符合实验结果。对激发态分子相互作用进行了分解分析。在电子相互作用中,电荷转移(CT)效应、激子相互作用和色散相互作用表现出显著的大贡献,而电子极化效应仅表现出较小的贡献。此外,还分析了结果,以确定每个环境分子的贡献,并根据发色团中π系统与分子的距离对结果进行解释。