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一种使用改进的广义杂化轨道的量子力学和分子力学组合方法:用于电子激发态的实现。

A combined quantum mechanical and molecular mechanical method using modified generalized hybrid orbitals: implementation for electronic excited states.

机构信息

Department of Chemistry, Graduate School of Sciences, Kyushu University, Fukuoka 812-8581, Japan.

出版信息

Phys Chem Chem Phys. 2011 Jun 28;13(24):11731-8. doi: 10.1039/c1cp20438f. Epub 2011 May 20.

Abstract

The generalized hybrid orbital (GHO) method is implemented at the second-order approximate coupled cluster singles and doubles (CC2) level for quantum mechanical (QM)/molecular mechanical (MM) electronic excited state calculations. The linear response function of CC2 in the GHO scheme is derived and implemented. The new implementation is applied to the first singlet excited states of three aromatic amino acids, phenylalanine, tyrosine, and tryptophan, and also bacteriorhodopsin for assessment. The results obtained for aromatic amino acids agreed well with the full QM CC2 calculations, while the calculated excitation energies of bacteriorhodopsin and its chromophore, all-trans retinal, reproduced the environmental shift of the experimental data. For the bacteriorhodopsin case, the environmental shift of GHO also showed good agreements with the experimental data. The contribution of the quantum effect of certain moieties in the excited states is elucidated by changing the partitioning of QM and MM regions.

摘要

广义杂化轨道(GHO)方法在二阶近似耦合簇单双激发(CC2)水平上用于量子力学(QM)/分子力学(MM)电子激发态计算。推导并实现了 GHO 方案中 CC2 的线性响应函数。新的实现应用于三种芳香族氨基酸(苯丙氨酸、酪氨酸和色氨酸)和菌紫质的第一单重激发态的评估。芳香族氨基酸的结果与全 QM CC2 计算吻合良好,而菌紫质及其发色团全反式视黄醛的激发能则再现了实验数据的环境位移。对于菌紫质的情况,GHO 的环境位移也与实验数据吻合良好。通过改变 QM 和 MM 区域的划分,阐明了激发态中某些基团的量子效应的贡献。

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