Taguchi Alexander T, Ohmori Daijiro, Dikanov Sergei A, Iwasaki Toshio
Department of Biochemistry and Molecular Biology , Nippon Medical School , Sendagi, Tokyo 113-8602 , Japan.
Department of Chemistry , Juntendo University , Inzai-shi , Chiba 270-1695 , Japan.
Biochemistry. 2018 Jul 17;57(28):4074-4082. doi: 10.1021/acs.biochem.8b00438. Epub 2018 Jun 21.
Interpretation of magnetic resonance data in the context of structural and chemical biology requires prior knowledge of the g-tensor directions for paramagnetic metallo-cofactors with respect to the protein structural frame. Access to this information is often limited by the strict requirement of suitable protein crystals for single-crystal electron paramagnetic resonance (EPR) measurements or the reliance on protons (with ambiguous locations in crystal structures) near the paramagnetic metal site. Here we develop a novel pulsed EPR approach with selective C-cysteine labeling of model [2Fe-2S] proteins to help bypass these problems. Analysis of the C-cysteine hyperfine tensors reproduces the g-tensor of the Pseudomonas putida ISC-like [2Fe-2S] ferredoxin (FdxB). Its application to the hyperthermophilic archaeal Rieske-type [2Fe-2S] ferredoxin (ARF) from Sulfolobus solfataricus, for which the single-crystal EPR approach was not feasible, supports the best-fit g -, g -, and g -tensor directions of the reduced cluster as nearly along Fe-Fe, S-S, and the cluster plane normal, respectively. These approximate principal directions of the reduced ARF g-tensor, explored by C pulsed EPR, are less skewed from the cluster molecular axes and are largely consistent with those previously determined by single-crystal EPR for the cytochrome bc-associated, reduced Rieske [2Fe-2S] center. This suggests the approximate g-tensor directions are conserved across the phylogenetically and functionally divergent Rieske-type [2Fe-2S] proteins.
在结构生物学和化学生物学背景下解读磁共振数据,需要事先了解顺磁性金属辅因子相对于蛋白质结构框架的g张量方向。获取此类信息往往受到限制,这是因为单晶电子顺磁共振(EPR)测量严格要求合适的蛋白质晶体,或者依赖于顺磁性金属位点附近的质子(在晶体结构中的位置不明确)。在此,我们开发了一种新颖的脉冲EPR方法,通过对模型[2Fe-2S]蛋白进行选择性C-半胱氨酸标记,以帮助绕过这些问题。对C-半胱氨酸超精细张量的分析再现了恶臭假单胞菌ISC样[2Fe-2S]铁氧化还原蛋白(FdxB)的g张量。将其应用于来自嗜热栖热菌的嗜热古菌Rieske型[2Fe-2S]铁氧化还原蛋白(ARF),对于该蛋白,单晶EPR方法不可行,结果支持还原态簇的最佳拟合g -、g -和g -张量方向分别近乎沿着Fe-Fe、S-S以及簇平面法线方向。通过C脉冲EPR探索的还原态ARF g张量的这些近似主方向,与簇分子轴的偏差较小,并且与先前通过单晶EPR确定的细胞色素bc相关的还原态Rieske [2Fe-2S]中心的主方向基本一致。这表明在系统发育和功能上不同的Rieske型[2Fe-2S]蛋白中,近似的g张量方向是保守的。