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通过C脉冲电子顺磁共振探索嗜热古菌还原型里斯克型铁氧化还原蛋白蛋白质结构框架中的g张量方向

g-Tensor Directions in the Protein Structural Frame of Hyperthermophilic Archaeal Reduced Rieske-Type Ferredoxin Explored by C Pulsed Electron Paramagnetic Resonance.

作者信息

Taguchi Alexander T, Ohmori Daijiro, Dikanov Sergei A, Iwasaki Toshio

机构信息

Department of Biochemistry and Molecular Biology , Nippon Medical School , Sendagi, Tokyo 113-8602 , Japan.

Department of Chemistry , Juntendo University , Inzai-shi , Chiba 270-1695 , Japan.

出版信息

Biochemistry. 2018 Jul 17;57(28):4074-4082. doi: 10.1021/acs.biochem.8b00438. Epub 2018 Jun 21.

DOI:10.1021/acs.biochem.8b00438
PMID:29890072
Abstract

Interpretation of magnetic resonance data in the context of structural and chemical biology requires prior knowledge of the g-tensor directions for paramagnetic metallo-cofactors with respect to the protein structural frame. Access to this information is often limited by the strict requirement of suitable protein crystals for single-crystal electron paramagnetic resonance (EPR) measurements or the reliance on protons (with ambiguous locations in crystal structures) near the paramagnetic metal site. Here we develop a novel pulsed EPR approach with selective C-cysteine labeling of model [2Fe-2S] proteins to help bypass these problems. Analysis of the C-cysteine hyperfine tensors reproduces the g-tensor of the Pseudomonas putida ISC-like [2Fe-2S] ferredoxin (FdxB). Its application to the hyperthermophilic archaeal Rieske-type [2Fe-2S] ferredoxin (ARF) from Sulfolobus solfataricus, for which the single-crystal EPR approach was not feasible, supports the best-fit g -, g -, and g -tensor directions of the reduced cluster as nearly along Fe-Fe, S-S, and the cluster plane normal, respectively. These approximate principal directions of the reduced ARF g-tensor, explored by C pulsed EPR, are less skewed from the cluster molecular axes and are largely consistent with those previously determined by single-crystal EPR for the cytochrome bc-associated, reduced Rieske [2Fe-2S] center. This suggests the approximate g-tensor directions are conserved across the phylogenetically and functionally divergent Rieske-type [2Fe-2S] proteins.

摘要

在结构生物学和化学生物学背景下解读磁共振数据,需要事先了解顺磁性金属辅因子相对于蛋白质结构框架的g张量方向。获取此类信息往往受到限制,这是因为单晶电子顺磁共振(EPR)测量严格要求合适的蛋白质晶体,或者依赖于顺磁性金属位点附近的质子(在晶体结构中的位置不明确)。在此,我们开发了一种新颖的脉冲EPR方法,通过对模型[2Fe-2S]蛋白进行选择性C-半胱氨酸标记,以帮助绕过这些问题。对C-半胱氨酸超精细张量的分析再现了恶臭假单胞菌ISC样[2Fe-2S]铁氧化还原蛋白(FdxB)的g张量。将其应用于来自嗜热栖热菌的嗜热古菌Rieske型[2Fe-2S]铁氧化还原蛋白(ARF),对于该蛋白,单晶EPR方法不可行,结果支持还原态簇的最佳拟合g -、g -和g -张量方向分别近乎沿着Fe-Fe、S-S以及簇平面法线方向。通过C脉冲EPR探索的还原态ARF g张量的这些近似主方向,与簇分子轴的偏差较小,并且与先前通过单晶EPR确定的细胞色素bc相关的还原态Rieske [2Fe-2S]中心的主方向基本一致。这表明在系统发育和功能上不同的Rieske型[2Fe-2S]蛋白中,近似的g张量方向是保守的。

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