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用于研究毫秒时间尺度蛋白质动力学的残基选择性 NCEST 和 CPMG 实验。

Residue selective N CEST and CPMG experiments for studies of millisecond timescale protein dynamics.

机构信息

Beijing Nuclear Magnetic Resonance Center, Peking University, Beijing, China; College of Chemistry and Molecular Engineering, Peking University, Beijing, China.

Beijing Nuclear Magnetic Resonance Center, Peking University, Beijing, China; College of Life Sciences, Peking University, Beijing, China.

出版信息

J Magn Reson. 2018 Aug;293:47-55. doi: 10.1016/j.jmr.2018.05.016. Epub 2018 Jun 1.

DOI:10.1016/j.jmr.2018.05.016
PMID:29890486
Abstract

Proteins are intrinsically dynamic molecules and undergo exchanges among multiple conformations to perform biological functions. The CPMG relaxation dispersion and CEST experiments are two important solution NMR techniques for characterizing the conformational exchange processes on the millisecond timescale. Traditional pseudo 3D N CEST and CPMG experiments have certain limitations in their applications. For example, both experiments have low sensitivity for broadened resonances, and the process of optimizing sample conditions and experimental parameters are often time consuming. To overcome these limitations, we herein present a new set of residue selective N CEST and CPMG pulse sequences by employing the Hartmann-Hahn cross-polarization transfer of magnetization in both 1D and 2D schemes. Combined with frequency labeling in the indirect dimension using only a small number of increments, the pulse sequences in the 2D scheme can be applied on resonances in overlapped regions of the H-N HSQC spectrum. The pulse sequences were further applied on several proteins, demonstrating their advantages over the traditional CEST and CPMG experiments under specific circumstances.

摘要

蛋白质是内在动态的分子,通过在多种构象之间进行交换来执行生物功能。CPMG 弛豫弥散和 CEST 实验是两种用于在毫秒时间尺度上表征构象交换过程的重要溶液 NMR 技术。传统的伪 3D N CEST 和 CPMG 实验在应用中有一定的局限性。例如,这两种实验对展宽的共振的灵敏度都较低,并且优化样品条件和实验参数的过程通常很耗时。为了克服这些限制,我们在此通过在 1D 和 2D 方案中使用磁化的哈特曼-哈恩交叉极化转移,提出了一组新的残基选择性 N CEST 和 CPMG 脉冲序列。通过仅使用少量增量在间接维度中进行频率标记,2D 方案中的脉冲序列可应用于 H-N HSQC 光谱重叠区域的共振。这些脉冲序列进一步应用于几种蛋白质,证明了它们在特定情况下优于传统的 CEST 和 CPMG 实验。

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