Departamento de Biología, Facultad de Ciencias Exactas y Naturales, Universidad del Valle, A. A. 25360 Cali, Valle del Cauca, Colombia; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721-0088, USA.
Departamento de Biología, Facultad de Ciencias Exactas y Naturales, Universidad del Valle, A. A. 25360 Cali, Valle del Cauca, Colombia.
Mol Phylogenet Evol. 2018 Oct;127:655-668. doi: 10.1016/j.ympev.2018.06.012. Epub 2018 Jun 15.
Whereas most of the studies that discuss the evolutionary divergence of Anolis lizards have dated the clade's crown group in between 31 and 64 Ma, a single study has recovered a significantly older age for the same node (87 Ma). These differences also entail notable consequences on the preferred biogeographical hypothesis for the whole clade. Here we analyze a total of seven dating strategies by combining three calibration sources in independent BEAST runs to infer the most probable divergence timing for anole lizards (a mitochondrial rate for ND2 gene, the Anolis dominicanus fossil, and a group of fossils assigned to the Priscagamines, Iguanines, and Idontosaurus clades). Based on the estimated timing, we also addressed whether chronograms differ the most in deeper or shallower nodes by exploring the trend in the standard deviation of mean ages between chronograms across time. Next, we focus on the pattern for a single shallow node by hypothesizing the biogeography of the island-endemic Malpelo anole (Anolis agassizi), and evaluating the temporal congruence between the species' divergence and the island geology. The estimated set of ages suggests that anoles most likely diverged 72 Ma (71-73 Ma), with the crown group established around 58 Ma (51-65 Ma). Dispersal is therefore supported as the major driver in the biogeography of the group (and in Caribbean lineages in particular). Our analyses also indicated that (1) rate-based analyses pulled dates toward younger ages, (2) the differences in node ages between chronograms decrease towards the tips regardless of the position of the constrained node, and that (3) the estimated age for deep nodes (e.g. Anolis stem) is highly influenced when deep nodes are also constrained. The latter two results imply that the estimated age for shallower nodes is largely unaffected by the used temporal constraint. The congruence of all chronograms for the Malpelo anole also supports this finding. Anolis agassizi was found to have diverged before the emergence of Malpelo island in each analysis (anole: 19-31 Ma vs. Malpelo island: 16-17 Ma). Finally, we recommend when performing absolute dating analyses to first test for sequence saturation in the analyzed dataset (especially when calibrations are based on molecular rates). Our study also points out the importance of using multiple node constraints, especially when placed deeply in the tree, for fossil-based divergence dating analyses.
虽然大多数讨论安乐蜥进化分歧的研究都将这个分支的冠群定在 31 到 64 百万年前之间,但有一项研究发现了同一节点的一个明显更古老的年龄(87 百万年前)。这些差异也对整个分支的首选生物地理假说产生了显著影响。在这里,我们通过在独立的 BEAST 运行中结合三个校准源来分析总共七种不同的定年策略,以推断安乐蜥的最可能的分歧时间(线粒体 ND2 基因的速率、安诺里斯多米尼加化石以及一组分配给 Priscagamines、Iguanines 和 Idontosaurus 分支的化石)。基于估计的时间,我们还通过探索随时间推移在跨时间的系统发育图中平均年龄标准差之间的趋势,来确定系统发育图在较深或较浅的节点上差异最大的情况。接下来,我们通过假设岛屿特有安乐蜥(安诺里斯·阿加齐)的生物地理学,并评估物种分歧与岛屿地质之间的时间一致性,来关注单个浅节点的模式。估计的年龄集表明,安乐蜥最有可能在 72 百万年前(71-73 百万年前)分化,其冠群大约在 58 百万年前(51-65 百万年前)建立。因此,扩散被认为是该群体(特别是加勒比谱系)生物地理学的主要驱动因素。我们的分析还表明:(1)基于速率的分析将日期推向了更年轻的年龄;(2)无论约束节点的位置如何,系统发育图中节点年龄的差异都朝着末端减小;(3)当深节点也受到约束时,深节点(例如安诺里斯茎)的估计年龄受到高度影响。后两个结果意味着,当深节点受到约束时,较浅节点的估计年龄在很大程度上不受所用时间约束的影响。马拉佩洛安乐蜥的所有系统发育图的一致性也支持了这一发现。在每次分析中,安诺里斯·阿加齐都在马拉佩洛岛出现之前就已经分化(安乐蜥:19-31 百万年前 vs. 马拉佩洛岛:16-17 百万年前)。最后,我们建议在进行绝对定年分析时,首先测试分析数据集中的序列饱和情况(尤其是当校准基于分子速率时)。我们的研究还指出了在基于化石的分歧定年分析中使用多个节点约束的重要性,特别是当这些约束放置在树的深处时。