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季节性动态变化改变了天然草原下潘帕斯生物群落土壤中的微生物分类和功能特征。

Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands.

作者信息

Barboza Anthony Diego Muller, Pylro Victor Satler, Jacques Rodrigo Josemar Seminot, Gubiani Paulo Ivonir, de Quadros Fernando Luiz Ferreira, da Trindade Júlio Kuhn, Triplett Eric W, Roesch Luiz

机构信息

Centro Interdisciplinar de Pesquisas em Biotecnologia-CIP-Biotec, Universidade Federal do Pampa, São Gabriel, Brazil.

Department of Soil Science, "Luiz de Queiroz" College of Agriculture, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.

出版信息

PeerJ. 2018 Jun 13;6:e4991. doi: 10.7717/peerj.4991. eCollection 2018.

Abstract

Soil microbial communities' assembly is strongly tied to changes in temperature and moisture. Although microbial functional redundancy seems to overcome taxonomical composition changes, the sensitivity and resilience of soil microbial communities from subtropical regions in response to seasonal variations are still poorly understood. Thus, the development of new strategies for biodiversity conservation and sustainable management require a complete understanding of the soil abiotic process involved in the selection of microbial taxa and functions. In this work, we used state of the art molecular methodologies (Next Generation Sequencing) to compare the taxonomic (metataxonomics) and functional (metatranscriptomics) profiles among soil samples from two subtropical natural grasslands located in the Pampa biome, Brazil, in response to short-term seasonal variations. Our data suggest that grasslands maintained a stable microbial community membership along the year with oscillation in abundance. Apparently soil microbial taxa are more susceptible to natural climatic disturbances while functions are more stable and change with less intensity along the year. Finally, our data allow us to conclude that the most abundant microbial groups and functions were shared between seasons and locations reflecting the existence of a stable taxonomical and functional core microbiota.

摘要

土壤微生物群落的组装与温度和湿度的变化密切相关。尽管微生物功能冗余似乎克服了分类组成的变化,但亚热带地区土壤微生物群落对季节变化的敏感性和恢复力仍知之甚少。因此,制定生物多样性保护和可持续管理的新策略需要全面了解参与微生物分类群和功能选择的土壤非生物过程。在这项工作中,我们使用了先进的分子方法(下一代测序)来比较巴西潘帕生物群落中两个亚热带天然草原土壤样品之间的分类学(元分类学)和功能(元转录组学)概况,以应对短期季节变化。我们的数据表明,草原全年保持稳定的微生物群落成员,丰度有波动。显然,土壤微生物分类群对自然气候干扰更敏感,而功能更稳定,全年变化强度较小。最后,我们的数据使我们能够得出结论,最丰富的微生物群和功能在季节和地点之间共享,这反映了稳定的分类学和功能核心微生物群的存在。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60b9/6004115/b6526a2f3ffd/peerj-06-4991-g001.jpg

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