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从基因型到表型:全基因组关联研究在心血管疾病中的功能随访基础。

From Genotype to Phenotype: A Primer on the Functional Follow-up of Genome-Wide Association Studies in Cardiovascular Disease.

机构信息

Division of Nephrology and Hypertension, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.

Feinberg Cardiovascular Research Institute, Northwestern University Feinberg School of Medicine, Chicago, IL.

出版信息

Circ Genom Precis Med. 2018 Feb;11(2). Epub 2018 Jan 30.

PMID:29915816
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6003539/
Abstract

Genome-wide association studies (GWASs) have implicated many human genomic loci in the development of complex traits. The loci identified by these studies are potentially involved in novel pathways that contribute to disease pathophysiology. However, eventual therapeutic targeting of these pathways relies on bridging the gap between genetic association and function, a task that first requires validation of causal genetic variants, casual genes, and directionality of effect. Executing this task requires basic knowledge of interpreting GWAS results and prioritizing candidates for further study, in addition to understanding the experimental methods available for evaluating candidate variants. Here we review the basic genetic principles of genome-wide association studies, the computational and experimental tools used for identifying causal variants and genes, and salient illustrative examples of how cardiovascular loci have undergone functional investigation.

摘要

全基因组关联研究(GWAS)已经在复杂性状的发展中涉及到许多人类基因组位点。这些研究中确定的位点可能涉及到新的途径,有助于疾病的病理生理学。然而,最终对这些途径进行治疗靶向依赖于弥合遗传关联和功能之间的差距,这一任务首先需要验证因果遗传变异、因果基因和效应的方向。执行这一任务需要基本的解释 GWAS 结果和优先考虑进一步研究候选者的知识,以及了解评估候选变异的可用实验方法。在这里,我们回顾了全基因组关联研究的基本遗传原理,用于识别因果变异和基因的计算和实验工具,以及心血管位点如何进行功能研究的突出实例。

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Large, Diverse Population Cohorts of hiPSCs and Derived Hepatocyte-like Cells Reveal Functional Genetic Variation at Blood Lipid-Associated Loci.大规模、多样化的人诱导多能干细胞及衍生的类肝细胞群体揭示了血脂相关基因座的功能遗传变异。
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Epigenetic Patterns in Blood Associated With Lipid Traits Predict Incident Coronary Heart Disease Events and Are Enriched for Results From Genome-Wide Association Studies.血液中与脂质特征相关的表观遗传模式可预测冠心病事件的发生,且全基因组关联研究结果丰富。
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