Department of Chemistry , University of Basel , Klingelbergstrasse 80 , CH-4056 Basel , Switzerland.
J Phys Chem B. 2018 Jul 19;122(28):7038-7048. doi: 10.1021/acs.jpcb.8b04448. Epub 2018 Jul 3.
Insulin dimerization and aggregation play important roles in the endogenous delivery of the hormone. One of the important residues at the insulin dimer interface is Phe, which is an invariant aromatic anchor that packs toward its own monomer inside a hydrophobic cavity formed by Val, Leu, Tyr, Cys, and Tyr. Using molecular dynamics and free-energy simulations within explicit solvent, the structural and dynamical consequences of mutations of Phe at position B24 to glycine (Gly), alanine (Ala), and d-Ala and the des-PheB25 variant are quantified. Consistent with experiments, it is found that the Gly and Ala modifications lead to insulin dimers with reduced stability by 4 and 5 kcal/mol from thermodynamic integration and 4 and 8 kcal/mol from results using molecular mechanics-generalized Born surface area, respectively. Given the experimental difficulties to quantify the thermodynamic stability of modified insulin dimers, such computations provide a valuable complement. Interestingly, the Gly mutant exists as a strongly and a weakly interacting dimer. Analysis of the molecular dynamics simulations shows that this can be explained by water molecules that replace direct monomer-monomer H-bonding contacts at the dimerization interface involving residues B24 to B26. It is concluded that such solvent molecules play an essential role and must be included in future insulin dimerization studies.
胰岛素二聚体和聚集在激素的内源性传递中发挥着重要作用。胰岛素二聚体界面上的一个重要残基是苯丙氨酸(Phe),它是一个不变的芳族锚定残基,在由缬氨酸(Val)、亮氨酸(Leu)、酪氨酸(Tyr)、半胱氨酸(Cys)和酪氨酸(Tyr)形成的疏水性腔体内,向其自身单体靠拢。使用明确溶剂中的分子动力学和自由能模拟,定量研究了位置 B24 的苯丙氨酸(Phe)突变为甘氨酸(Gly)、丙氨酸(Ala)和 D-丙氨酸(d-Ala)以及去苯丙氨酸(des-PheB25)变体的结构和动力学后果。与实验一致,发现 Gly 和 Ala 修饰导致胰岛素二聚体的稳定性分别降低了 4 和 5 kcal/mol(通过热力学积分)和 4 和 8 kcal/mol(通过使用分子力学-广义 Born 表面面积的结果)。鉴于实验上难以量化修饰胰岛素二聚体的热力学稳定性,因此此类计算提供了有价值的补充。有趣的是,Gly 突变体存在强相互作用和弱相互作用的二聚体。分子动力学模拟的分析表明,这可以用水分子来解释,这些水分子取代了涉及残基 B24 到 B26 的二聚体界面上的单体-单体氢键接触。结论是,此类溶剂分子起着至关重要的作用,在未来的胰岛素二聚体研究中必须将其包括在内。