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全景揭示寨卡病毒 NS5 甲基转移酶结合位点环的动态进化——聚焦分子景观。

A panoptic uncovering of the dynamical evolution of the Zika Virus NS5 methyltransferase binding site loops-zeroing in on the molecular landscape.

机构信息

Molecular Bio-computation and Drug Design Laboratory, School of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.

出版信息

Chem Biol Drug Des. 2018 Nov;92(5):1838-1850. doi: 10.1111/cbdd.13353. Epub 2018 Jul 13.

Abstract

The global threat of the Zika virus to humanity is real. Innovative and potent anti-Zika virus drugs are still at large, due to the lack of anti-Zika virus drugs that have passed phase 1 trials. Experimental research has revealed novel inhibitors of Zika virus NS5 methyltransferase enzyme. This study has taken a step further to provide insight into the molecular dynamics of Zika virus and inhibitor binding, which have not been established experimentally. Movements of the methyltransferase binding site loops have a large role to play in the methylation of the viral mRNA cap, which is essential for Zika virus replication. Here, we pinpoint the binding interactions between each potential inhibitor and the methyltransferase, residues that are responsible for binding, as well as which inhibitor-bound complex renders the methyltransferase more stable. We also highlight the conformational changes that occur within the methyltransferase to accommodate binding of inhibitors and consequences of those changes upon the RNA- and cap-binding sites in the methyltransferase. This research will improve the understanding of the Zika virus NS5 methyltransferase enzyme, and will be beneficial in driving the development of anti-Zika virus drugs.

摘要

寨卡病毒对人类的全球威胁是真实存在的。由于缺乏已通过 1 期临床试验的抗寨卡病毒药物,创新且有效的抗寨卡病毒药物仍未出现。实验研究已经发现了寨卡病毒 NS5 甲基转移酶的新型抑制剂。本研究更进一步,深入了解了尚未通过实验确定的寨卡病毒和抑制剂结合的分子动力学。甲基转移酶结合位点环的运动在病毒 mRNA 帽的甲基化中起着重要作用,这对寨卡病毒的复制至关重要。在这里,我们确定了每个潜在抑制剂与甲基转移酶之间的结合相互作用,负责结合的残基,以及哪种抑制剂结合复合物使甲基转移酶更稳定。我们还强调了甲基转移酶内发生的构象变化,以适应抑制剂的结合,以及这些变化对甲基转移酶中 RNA 和帽结合位点的影响。这项研究将增进对寨卡病毒 NS5 甲基转移酶的了解,并有助于推动抗寨卡病毒药物的开发。

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