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[具体物种名称]中假定的聚羟基脂肪酸酯合酶(PhaC)的鉴定与分析

Identification and Analysis of Putative Polyhydroxyalkanoate Synthase (PhaC) in .

作者信息

Lim Ju Hyoung, Rhie Ho-Gun, Kim Jeong Nam

机构信息

Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.

出版信息

J Microbiol Biotechnol. 2018 Jul 28;28(7):1133-1140. doi: 10.4014/jmb.1803.03006.

DOI:10.4014/jmb.1803.03006
PMID:29926705
Abstract

KLR101 was found to be capable of producing polyhydroxyalkanoate (PHA) using various sugars and fatty acids with carbon numbers ranging from 2 to 6. The PHA granules consisted mainly of a poly(3-hydroxybutyrate) homopolymer and/or poly(3-hydroxybutyrate--3-hydroxyvalerate) copolymer. Genomic DNA of was fractionated and cloned into a lambda library, in which a 5.8-kb fragment that hybridized to a heterologous probe from was identified. In vivo expression in KC2671 (pUMS), restriction mapping, Southern hybridization experiments, and sequencing data revealed that PHA biosynthesis by relied upon a polypeptide encoded by a 1,683-bp non-operonal ORF, which was preceded by a possible -24/-12 promoter and highly similar to DNA sequences of a gene encoding PHA synthase in the genus . In vivo expression of the putative PHA synthase gene () in a recombinant strain was investigated by using glucose and decanoate as substrates. (, pUMS) grown in medium containing glucose accumulated PHA granules consisting mainly of 3-hydroxybutyrate, whereas only a trace amount of 3-hydroxydecanoate was detected from an mutant () grown in medium containing decanoate. In vitro enzymatic assessment experiments showed that 3-hydroxybutyryl-CoA was efficiently used as a substrate of purified PhaC, suggesting that the putative PHA synthase of utilizes mainly short-chain-length PHA precursors as a substrate.

摘要

发现KLR101能够利用碳数范围为2至6的各种糖类和脂肪酸生产聚羟基脂肪酸酯(PHA)。PHA颗粒主要由聚(3-羟基丁酸酯)均聚物和/或聚(3-羟基丁酸酯-3-羟基戊酸酯)共聚物组成。对其基因组DNA进行分级分离并克隆到λ文库中,在该文库中鉴定出一个与来自的异源探针杂交的5.8kb片段。在KC2671(pUMS)中的体内表达、限制性图谱分析、Southern杂交实验和测序数据表明,KLR101的PHA生物合成依赖于一个由1683bp的非操纵子ORF编码的多肽,该ORF之前有一个可能的-24 / -12启动子,并且与该属中一个编码PHA合酶的基因的DNA序列高度相似。通过使用葡萄糖和癸酸作为底物,研究了重组菌株中假定的PHA合酶基因()的体内表达。在含有葡萄糖的培养基中生长的(,pUMS)积累了主要由3-羟基丁酸酯组成的PHA颗粒,而在含有癸酸的培养基中生长的突变体()仅检测到微量的3-羟基癸酸酯。体外酶促评估实验表明,3-羟基丁酰辅酶A被有效地用作纯化的PhaC的底物,这表明KLR101假定的PHA合酶主要利用短链长度的PHA前体作为底物。

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