Baschal Erin E, Terhune Elizabeth A, Wethey Cambria I, Baschal Robin M, Robinson Kandice D, Cuevas Melissa T, Pradhan Shreyash, Sutphin Brittan S, Taylor Matthew R G, Gowan Katherine, Pearson Chad G, Niswander Lee A, Jones Kenneth L, Miller Nancy H
Department of Orthopedics, University of Colorado Anschutz Medical Campus, Aurora, CO
Department of Orthopedics, University of Colorado Anschutz Medical Campus, Aurora, CO.
G3 (Bethesda). 2018 Jul 31;8(8):2663-2672. doi: 10.1534/g3.118.200290.
Idiopathic scoliosis (IS) is a structural lateral spinal curvature of ≥10° that affects up to 3% of otherwise healthy children and can lead to life-long problems in severe cases. It is well-established that IS is a genetic disorder. Previous studies have identified genes that may contribute to the IS phenotype, but the overall genetic etiology of IS is not well understood. We used exome sequencing to study five multigenerational families with IS. Bioinformatic analyses identified unique and low frequency variants (minor allele frequency ≤5%) that were present in all sequenced members of the family. Across the five families, we identified a total of 270 variants with predicted functional consequences in 246 genes, and found that eight genes were shared by two families. We performed GO term enrichment analyses, with the hypothesis that certain functional annotations or pathways would be enriched in the 246 genes identified in our IS families. Using three complementary programs to complete these analyses, we identified enriched categories that include stereocilia and other actin-based cellular projections, cilia and other microtubule-based cellular projections, and the extracellular matrix (ECM). Our results suggest that there are multiple paths to IS and provide a foundation for future studies of IS pathogenesis.
特发性脊柱侧凸(IS)是一种结构性脊柱侧凸,侧弯角度≥10°,影响多达3%的健康儿童,严重情况下可导致终身问题。众所周知,IS是一种遗传性疾病。先前的研究已经确定了可能导致IS表型的基因,但IS的整体遗传病因尚不清楚。我们使用外显子组测序研究了五个患有IS的多代家族。生物信息学分析确定了家族所有测序成员中存在的独特低频变异(次要等位基因频率≤5%)。在这五个家族中,我们总共在246个基因中鉴定出270个具有预测功能后果的变异,并发现有八个基因在两个家族中共享。我们进行了基因本体(GO)术语富集分析,假设某些功能注释或途径会在我们的IS家族中鉴定出的246个基因中富集。使用三个互补程序完成这些分析后,我们确定了富集类别,包括静纤毛和其他基于肌动蛋白的细胞突起、纤毛和其他基于微管的细胞突起以及细胞外基质(ECM)。我们的结果表明,IS存在多种发病途径,并为未来IS发病机制的研究奠定了基础。