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对 23 个多代特发性脊柱侧凸家系的全外显子组测序揭示细胞骨架变异的富集,提示高度多基因疾病。

Whole Exome Sequencing of 23 Multigeneration Idiopathic Scoliosis Families Reveals Enrichments in Cytoskeletal Variants, Suggests Highly Polygenic Disease.

机构信息

Department of Orthopedics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.

Musculoskeletal Research Center, Children's Hospital Colorado, Aurora, CO 80045, USA.

出版信息

Genes (Basel). 2021 Jun 16;12(6):922. doi: 10.3390/genes12060922.

Abstract

Adolescent idiopathic scoliosis (AIS) is a lateral spinal curvature >10° with rotation that affects 2-3% of healthy children across populations. AIS is known to have a significant genetic component, and despite a handful of risk loci identified in unrelated individuals by GWAS and next-generation sequencing methods, the underlying etiology of the condition remains largely unknown. In this study, we performed exome sequencing of affected individuals within 23 multigenerational families, with the hypothesis that the occurrence of rare, low frequency, disease-causing variants will co-occur in distantly related, affected individuals. Bioinformatic filtering of uncommon, potentially damaging variants shared by all sequenced family members revealed 1448 variants in 1160 genes across the 23 families, with 132 genes shared by two or more families. Ten genes were shared by >4 families, and no genes were shared by all. Gene enrichment analysis showed an enrichment of variants in cytoskeletal and extracellular matrix related processes. These data support a model that AIS is a highly polygenic disease, with few variant-containing genes shared between affected individuals across different family lineages. This work presents a novel resource for further exploration in familial AIS genetic research.

摘要

青少年特发性脊柱侧凸(AIS)是一种侧向脊柱弯曲>10°并伴有旋转的疾病,影响着人群中 2-3%的健康儿童。AIS 已知具有显著的遗传成分,尽管通过全基因组关联研究(GWAS)和下一代测序方法在无关联个体中已经确定了少数几个风险位点,但该疾病的潜在病因仍很大程度上未知。在这项研究中,我们对 23 个多代家族中的受影响个体进行了外显子组测序,假设罕见的、低频的致病变异在远亲受影响个体中会共同发生。对所有测序家族成员共享的罕见、潜在有害变异进行生物信息学过滤,揭示了 23 个家族中 1160 个基因的 1448 个变异,其中有 132 个基因被两个或更多家族共享。有 10 个基因被>4 个家族共享,没有基因被所有家族共享。基因富集分析显示,细胞骨架和细胞外基质相关过程中的变异富集。这些数据支持 AIS 是一种高度多基因疾病的模型,在不同家族谱系的受影响个体之间共享的变异基因很少。这项工作为家族性 AIS 遗传研究的进一步探索提供了一个新的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db66/8235452/7b42929297a8/genes-12-00922-g002.jpg

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