从新加坡空气中分离出的施氏不动杆菌SGAir0122的全基因组序列
Complete Genome Sequence of Acinetobacter schindleri SGAir0122 Isolated from Singapore Air.
作者信息
Kee Carmon, Junqueira Ana Carolina M, Uchida Akira, Purbojati Rikky W, Houghton James N I, Chénard Caroline, Wong Anthony, Clare Megan E, Kushwaha Kavita K, Panicker Deepa, Putra Alexander, Gaultier Nicolas E, Premkrishnan Balakrishnan N V, Heinle Cassie E, Vettath Vineeth Kodengil, Drautz-Moses Daniela I, Schuster Stephan C
机构信息
Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore.
Asian School of the Environment, Nanyang Technological University, Singapore.
出版信息
Genome Announc. 2018 Jun 28;6(26):e00567-18. doi: 10.1128/genomeA.00567-18.
Abstract
strain SGAir0122 was isolated from tropical air samples collected in Singapore. The prevalence of nosocomial infection caused by this Gram-negative bacterium indicates its clinical significance as an opportunistic human pathogen. Its complete genome consists of one chromosome of 3.105 Mb and a plasmid of 181 kb.
摘要
菌株SGAir0122是从新加坡采集的热带空气样本中分离出来的。这种革兰氏阴性菌引起的医院感染流行情况表明其作为一种机会性人类病原体具有临床意义。其完整基因组由一条3.105 Mb的染色体和一个181 kb的质粒组成。
相似文献
1
Complete Genome Sequence of Acinetobacter schindleri SGAir0122 Isolated from Singapore Air.从新加坡空气中分离出的施氏不动杆菌SGAir0122的全基因组序列
Genome Announc. 2018 Jun 28;6(26):e00567-18. doi: 10.1128/genomeA.00567-18.
2
Complete Genome Sequence of Pseudomonas stutzeri Type Strain SGAir0442, Isolated from Singapore Air Samples.从新加坡空气样本中分离出的施氏假单胞菌模式菌株SGAir0442的全基因组序列
Genome Announc. 2018 May 31;6(22):e00424-18. doi: 10.1128/genomeA.00424-18.
3
Complete Genome Sequence of the Bacterium Serratia marcescens SGAir0764, Isolated from Singapore Air.从新加坡空气分离出的粘质沙雷氏菌SGAir0764的全基因组序列
Genome Announc. 2018 Jul 5;6(27):e00637-18. doi: 10.1128/genomeA.00637-18.
4
Complete Genome Sequence of Staphylococcus haemolyticus Type Strain SGAir0252.溶血葡萄球菌模式菌株SGAir0252的全基因组序列
Genome Announc. 2018 May 10;6(19):e00229-18. doi: 10.1128/genomeA.00229-18.
5
Complete Genome Sequence of Type Strain SGAir0031 Isolated from Tropical Air Collected in Singapore.从新加坡采集的热带空气中分离出的模式菌株SGAir0031的全基因组序列
Genome Announc. 2017 Nov 9;5(45):e01260-17. doi: 10.1128/genomeA.01260-17.
6
Complete Genome Sequence of Acinetobacter indicus Type Strain SGAir0564 Isolated from Tropical Air Collected in Singapore.从新加坡采集的热带空气中分离出的印度不动杆菌模式菌株SGAir0564的全基因组序列
Genome Announc. 2018 May 3;6(18):e00230-18. doi: 10.1128/genomeA.00230-18.
7
Complete Genome Sequence of sp. Strain SGAir0570, Isolated from Tropical Air Collected in Singapore.从新加坡采集的热带空气中分离出的sp.菌株SGAir0570的全基因组序列
Microbiol Resour Announc. 2019 Aug 22;8(34):e00613-19. doi: 10.1128/MRA.00613-19.
8
Genome Sequence of Geobacillus thermoleovorans SGAir0734, Isolated from Singapore Air.从新加坡空气分离出的嗜热栖热放线菌SGAir0734的基因组序列
Genome Announc. 2018 Jul 5;6(27):e00636-18. doi: 10.1128/genomeA.00636-18.
9
Bacterial identification, clinical significance, and antimicrobial susceptibilities of Acinetobacter ursingii and Acinetobacter schindleri, two frequently misidentified opportunistic pathogens.常被误认的两种机会性病原体——乌尔辛不动杆菌和辛德不动杆菌的细菌鉴定、临床意义及药敏情况
J Clin Microbiol. 2006 Dec;44(12):4471-8. doi: 10.1128/JCM.01535-06. Epub 2006 Oct 18.
10
Genome Sequence of the Tropical Atmosphere Bacterium sp. Strain SGAir0037.热带大气细菌菌株SGAir0037的基因组序列。
Microbiol Resour Announc. 2019 Sep 12;8(37):e00610-19. doi: 10.1128/MRA.00610-19.
引用本文的文献
1
MITE , a Novel Mobile Miniature Inverted-Repeat Transposable Element Identified in ATCC 17978 and Its Prevalence across the Family.MITE，一种新型的移动微型反向重复转座元件，在 ATCC 17978 及其家族中普遍存在。
mSphere. 2019 Feb 20;4(1):e00028-19. doi: 10.1128/mSphereDirect.00028-19.
本文引用的文献
1
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
2
Microbial species delineation using whole genome sequences.利用全基因组序列进行微生物物种划分。
Nucleic Acids Res. 2015 Aug 18;43(14):6761-71. doi: 10.1093/nar/gkv657. Epub 2015 Jul 6.
3
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
4
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
5
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
6
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
7
A phylum-level bacterial phylogenetic marker database.一门细菌系统发育标志数据库。
Mol Biol Evol. 2013 Jun;30(6):1258-62. doi: 10.1093/molbev/mst059. Epub 2013 Mar 21.
8
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
9
Bacterial identification, clinical significance, and antimicrobial susceptibilities of Acinetobacter ursingii and Acinetobacter schindleri, two frequently misidentified opportunistic pathogens.常被误认的两种机会性病原体——乌尔辛不动杆菌和辛德不动杆菌的细菌鉴定、临床意义及药敏情况
J Clin Microbiol. 2006 Dec;44(12):4471-8. doi: 10.1128/JCM.01535-06. Epub 2006 Oct 18.
10
Acinetobacter species as nosocomial pathogens.不动杆菌属作为医院感染病原体。
Eur J Clin Microbiol Infect Dis. 1998 Feb;17(2):73-7. doi: 10.1007/BF01682159.
Zotero 插件