大豆胞囊线虫（大豆异皮线虫）内共生菌“嗜线虫心杆菌候选种”菌株cHgTN10的基因组序列
Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont "Candidatus Cardinium hertigii" Strain cHgTN10.
作者信息
Showmaker Kurt C, Walden Kimberly K O, Fields Christopher J, Lambert Kris N, Hudson Matthew E
机构信息
Department of Crop Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
出版信息
Genome Announc. 2018 Jun 28;6(26):e00624-18. doi: 10.1128/genomeA.00624-18.
Abstract
In this study, we present the genome sequence of the " Cardinium hertigii" strain cHgTN10, an endosymbiotic bacterium of the plant-parasitic nematode This is the first genome assembly reported for an endosymbiont directly sequenced from a tylenchid nematode.
摘要
在本研究中，我们展示了植物寄生线虫的内共生细菌“赫氏卡登氏菌”菌株cHgTN10的基因组序列。这是首次报道的从垫刃目线虫直接测序获得的内共生菌基因组组装结果。
相似文献
1
Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont "Candidatus Cardinium hertigii" Strain cHgTN10.大豆胞囊线虫（大豆异皮线虫）内共生菌“嗜线虫心杆菌候选种”菌株cHgTN10的基因组序列
Genome Announc. 2018 Jun 28;6(26):e00624-18. doi: 10.1128/genomeA.00624-18.
2
'Candidatus Paenicardinium endonii', an endosymbiont of the plant-parasitic nematode Heterodera glycines (Nemata: Tylenchida), affiliated to the phylum Bacteroidetes.“暂定恩氏副心卡菌”，是植物寄生线虫大豆异皮线虫（线虫纲：垫刃目）的一种内共生菌，隶属于拟杆菌门。
Int J Syst Evol Microbiol. 2006 Jul;56(Pt 7):1697-1702. doi: 10.1099/ijs.0.64234-0.
3
Occurrence of the White Soybean Cyst Nematode, , and the Soybean Cyst Nematode, in Korea.韩国的白大豆胞囊线虫和大豆胞囊线虫的发生情况。
Plant Dis. 2021 Jan;105(1):31-33. doi: 10.1094/PDIS-09-19-1932-SC. Epub 2020 Nov 11.
4
Distribution of Bacterial Endosymbionts of the Clade in Plant-Parasitic Nematodes.Clade 植物寄生线虫内生细菌的分布。
Int J Mol Sci. 2023 Feb 2;24(3):2905. doi: 10.3390/ijms24032905.
5
Comparative Genomics of - Dual Endosymbiosis in a Plant-Parasitic Nematode.植物寄生线虫双重内共生的比较基因组学
Front Microbiol. 2018 Oct 16;9:2482. doi: 10.3389/fmicb.2018.02482. eCollection 2018.
6
The Heterodera glycines effector Hg16B09 is required for nematode parasitism and suppresses plant defense response.大豆胞囊线虫效应子 Hg16B09 对于线虫寄生是必需的，并抑制植物防御反应。
Plant Sci. 2019 Dec;289:110271. doi: 10.1016/j.plantsci.2019.110271. Epub 2019 Sep 14.
7
Nematodes in Michigan. I. Distribution of Heterodera glycines and Other Plant-parasitic Nematodes in Soybean.密歇根州的线虫。一、大豆中大豆孢囊线虫及其他植物寄生线虫的分布
J Nematol. 1994 Dec;26(4 Suppl):720-6.
8
The effects of and on the yield and quality of edamame ( l.) in Arkansas.[此处原文内容不完整，推测可能是两种因素之类的，但无法准确翻译完整句子，仅按现有内容翻译为] 和 对阿肯色州毛豆（大豆属）产量和品质的影响。
J Nematol. 2020;52:1-15. doi: 10.21307/jofnem-2020-012.
9
A model plant pathogen from the kingdom Animalia: Heterodera glycines, the soybean cyst nematode.一种来自动物界的典型植物病原体：大豆胞囊线虫，即大豆异皮线虫。
Annu Rev Phytopathol. 2006;44:283-303. doi: 10.1146/annurev.phyto.43.040204.140218.
10
Identification of (Tylenchida; Heteroderidae) Using qPCR.使用定量聚合酶链反应鉴定（垫刃目；异皮科）
Plant Pathol J. 2019 Dec;35(6):654-661. doi: 10.5423/PPJ.OA.04.2019.0086. Epub 2019 Dec 12.
引用本文的文献
1
The ecology, evolution, and physiology of Cardinium: a widespread heritable endosymbiont of invertebrates.卡丁氏菌的生态学、进化与生理学：一种广泛存在的无脊椎动物可遗传内共生菌。
FEMS Microbiol Rev. 2025 Jan 14;49. doi: 10.1093/femsre/fuaf031.
2
Distribution of Bacterial Endosymbionts of the Clade in Plant-Parasitic Nematodes.Clade 植物寄生线虫内生细菌的分布。
Int J Mol Sci. 2023 Feb 2;24(3):2905. doi: 10.3390/ijms24032905.
3
Development of a multi-locus sequence typing system helps reveal the evolution of Cardinium hertigii, a reproductive manipulator symbiont of insects.开发多基因序列分型系统有助于揭示昆虫生殖操纵共生菌 Cardinium hertigii 的进化。
BMC Microbiol. 2019 Nov 27;19(1):266. doi: 10.1186/s12866-019-1638-9.
4
The draft genome of strain Cpun from biting midges confirms insect are not a monophyletic group and reveals a novel gene family expansion in a symbiont.蠓虫Cpun菌株的基因组草图证实昆虫并非单系类群，并揭示了共生体中一个新的基因家族扩张。
PeerJ. 2019 Feb 21;7:e6448. doi: 10.7717/peerj.6448. eCollection 2019.
本文引用的文献
1
Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines.从大豆胞囊线虫早期生活史转录组中挖掘新型全球效应因子。
Sci Rep. 2018 Feb 6;8(1):2505. doi: 10.1038/s41598-018-20536-5.
2
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
3
Circlator: automated circularization of genome assemblies using long sequencing reads.Circlator：利用长测序读段实现基因组组装的自动化环化
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
4
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
5
Fast and sensitive protein alignment using DIAMOND.使用 DIAMOND 进行快速灵敏的蛋白质比对。
Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17.
6
The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci.卡氏菌cBtQ1的基因组为研究基因组缩减、共生体运动性及其在烟粉虱中的定殖提供了见解。
Genome Biol Evol. 2014 Apr;6(4):1013-30. doi: 10.1093/gbe/evu077.
7
A novel flavivirus in the soybean cyst nematode.一种新型的大豆胞囊线虫中的黄病毒。
J Gen Virol. 2014 Jun;95(Pt 6):1272-1280. doi: 10.1099/vir.0.060889-0. Epub 2014 Mar 18.
8
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
9
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.TopHat2：在存在插入、缺失和基因融合的情况下对转录组进行精确比对。
Genome Biol. 2013 Apr 25;14(4):R36. doi: 10.1186/gb-2013-14-4-r36.
10
Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii.比较基因组学表明，细胞质不亲和性在 Cardinium hertigii 中是独立起源的。
PLoS Genet. 2012;8(10):e1003012. doi: 10.1371/journal.pgen.1003012. Epub 2012 Oct 25.
Zotero 插件