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解析矮南美杉在不同光照条件下生存的基因共表达网络。

Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions.

机构信息

Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Cautín, 4780000, Chile.

CEAZA, Centro de Estudios Avanzados en Zonas Áridas, Casilla 599, La Serena, Chile.

出版信息

New Phytol. 2018 Oct;220(1):278-287. doi: 10.1111/nph.15278. Epub 2018 Jun 29.

DOI:10.1111/nph.15278
PMID:29956327
Abstract

Gevuina avellana (Proteaceae) is a typical tree from the South American temperate rainforest. Although this species mostly regenerates in shaded understories, it exhibits an exceptional ecological breadth, being able to live under a wide range of light conditions. Here we studied the genetic basis that underlies physiological acclimation of the photosynthetic responses of G. avellana under contrasting light conditions. We analyzed carbon assimilation and light energy used for photochemical processes in plants acclimated to contrasting light conditions. Also, we used a transcriptional profile of leaf primordia from G. avellana saplings growing under different light environments in their natural habitat, to identify the gene coexpression network underpinning photosynthetic performance and light-related processes. The photosynthetic parameters revealed optimal performance regardless of light conditions. Strikingly, the mechanism involved in dissipation of excess light energy showed no significant differences between high- and low-light-acclimated plants. The gene coexpression network defined a community structure consistent with the photochemical responses, including genes involved mainly in assembly and functioning of photosystems, photoprotection, and retrograde signaling. This ecophysiological genomics approach improves our understanding of the intraspecific variability that allows G. avellana to have optimal photochemical and photoprotective mechanisms in the diverse light habitats it encounters in nature.

摘要

马缨花(山龙眼科)是一种典型的南温带雨林树种。虽然这种物种主要在阴暗的林下再生,但它表现出了异常广泛的生态适应性,能够在广泛的光照条件下生存。在这里,我们研究了马缨花在不同光照条件下光合反应生理适应的遗传基础。我们分析了适应不同光照条件的植物的碳同化和用于光化学过程的光能。此外,我们使用了在其自然栖息地中生长在不同光照环境下的马缨花实生苗叶片原基的转录组谱,以确定支持光合作用性能和与光照相关过程的基因共表达网络。光合参数显示,无论光照条件如何,性能均达到最佳。值得注意的是,在高光和低光适应植物之间,过量光能耗散所涉及的机制没有显著差异。基因共表达网络定义了一个与光化学反应一致的群落结构,包括主要涉及光系统组装和功能、光保护和逆行信号的基因。这种生态生理基因组学方法提高了我们对种内可变性的理解,这种可变性使马缨花在自然界中遇到的各种光照生境中具有最佳的光化学和光保护机制。

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