Department of Earth System Science, Stanford University, Stanford, CA, 94305, USA.
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA.
Environ Microbiol. 2018 Dec;20(12):4281-4296. doi: 10.1111/1462-2920.14342. Epub 2018 Jul 26.
Nitrogen fixation, the biological conversion of N to NH , is critical to alleviating nitrogen limitation in many marine ecosystems. To date, few measurements exist of N fixation in deep-sea sediments. Here, we conducted > 400 bottle incubations with sediments from methane seeps, whale falls and background sites off the western coast of the United States from 600 to 2893 m water depth to investigate the potential rates, spatial distribution and biological mediators of benthic N fixation. We found that N fixation was widespread, yet heterogeneously distributed with sediment depth at all sites. In some locations, rates exceeded previous measurements by > 10×, and provided up to 30% of the community anabolic growth requirement for nitrogen. Diazotrophic activity appeared to be inhibited by pore water ammonium: N fixation was only observed if incubation ammonium concentrations were ≤ 25 μM, and experimental additions of ammonium reduced diazotrophy. In seep sediments, N fixation was dependent on CH and coincident with sulphate reduction, consistent with previous work showing diazotrophy by microorganisms mediating sulphate-coupled methane oxidation. However, the pattern of diazotrophy was different in whale-fall and associated reference sediments, where it was largely unaffected by CH , suggesting catabolically different diazotrophs at these sites.
固氮作用,即氮向氨的生物转化,对于缓解许多海洋生态系统中的氮限制至关重要。迄今为止,对深海沉积物中的固氮作用的测量很少。在这里,我们对美国西海岸以外的甲烷渗漏、鲸落和背景地点的水深 600 至 2893 米的沉积物进行了超过 400 次瓶式培养,以研究底栖固氮的潜在速率、空间分布和生物介导因素。我们发现固氮作用广泛存在,但在所有地点都随沉积物深度呈异质分布。在一些地点,速率超过了之前的测量值的 10 倍以上,为氮的社区合成生长需求提供了高达 30%的氮。固氮作用似乎受到孔隙水氨的抑制:只有当培养氨浓度≤25 μM 时才观察到固氮作用,而氨的实验添加会降低固氮作用。在渗漏沉积物中,固氮作用依赖于 CH ,与硫酸盐还原同时发生,与先前表明通过微生物介导硫酸盐耦合甲烷氧化的固氮作用的研究结果一致。然而,鲸落和相关参考沉积物中的固氮作用模式不同,其中固氮作用受 CH 的影响不大,这表明这些地点的固氮作用具有不同的分解代谢特性。