Department of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Life Sciences Institute, University of Michigan, Ann Arbor, Michigan, USA.
Eur J Hum Genet. 2018 Nov;26(11):1582-1587. doi: 10.1038/s41431-018-0209-0. Epub 2018 Jul 5.
Medical genomics research performed in diverse population facilitates a better understanding of the genetic basis of developmental disorders, with regional implications for community genetics. Autosomal recessive mitochondrial complex I deficiency (MCID) accounts for a constellation of clinical features, including encephalopathies, myopathies, and Leigh Syndrome. Using whole-exome sequencing, we identified biallelic missense variants in NDUFV1 that encodes the 51-kD subunit of complex I (NADH dehydrogenase) NDUFV1. Mapping the variants on published crystal structures of mitochondrial complex I demonstrate that the novel c.1118T > C (p.(Phe373Ser)) variant is predicted to diminish the affinity of the active pocket of NDUFV1 for FMN that correlates to an early onset of debilitating MCID symptoms. The c.1156C > T (p.(Arg386Cys)) variant is predicted to alter electron shuttling required for energy production and correlate to a disease onset in childhood. NDUFV1 c.1156C > T (p.(Arg386Cys)) represents a founder variant in South Asian populations that have value in prioritizing this variant in a population-specific manner for genetic diagnostic evaluation. In conclusion, our results demonstrate the advantage of analyzing population-specific sequences to understand the disease pathophysiology and prevalence of inherited risk variants in the underrepresented populations.
医学基因组学研究在不同人群中的应用促进了对发育障碍遗传基础的深入理解,这对社区遗传学具有区域意义。常染色体隐性线粒体复合物 I 缺陷(MCID)表现为一系列临床特征,包括脑病、肌病和 Leigh 综合征。我们通过全外显子组测序,在编码复合物 I(NADH 脱氢酶)NDUFV1 的 51-kD 亚基的 NDUFV1 中发现了双等位基因错义变异。将这些变异映射到已发表的线粒体复合物 I 晶体结构上表明,新型 c.1118T>C(p.(Phe373Ser))变异可能会降低 NDUFV1 活性口袋与 FMN 的亲和力,这与早期出现使人衰弱的 MCID 症状相关。c.1156C>T(p.(Arg386Cys))变异可能会改变电子传递,从而影响能量产生,并与儿童发病相关。NDUFV1 c.1156C>T(p.(Arg386Cys))是南亚人群中的一个创始变异,这对于以人群特异性方式优先考虑这种变异进行遗传诊断评估具有重要意义。总之,我们的研究结果表明,分析特定人群的序列有助于理解疾病病理生理学以及代表性不足人群中遗传风险变异的流行情况。