From the Department of Genetics, Curriculum in Genetics and Molecular Biology.
Lineberger Comprehensive Cancer Center.
J Biol Chem. 2018 Aug 31;293(35):13592-13603. doi: 10.1074/jbc.RA118.003381. Epub 2018 Jul 9.
Chromatin remodelers use bromodomains (BDs) to recognize histones. Polybromo 1 (PBRM1 or BAF180) is hypothesized to function as the nucleosome-recognition subunit of the PBAF chromatin-remodeling complex and is frequently mutated in clear cell renal cell carcinoma (ccRCC). Previous studies have applied methods to explore the binding specificities of the six individual PBRM1 BDs. However, BD targeting to histones and the influence of neighboring BD on nucleosome recognition have not been well characterized. Here, using histone microarrays and intact nucleosomes to investigate the histone-binding characteristics of the six PBRM1 BDs individually and combined, we demonstrate that BD2 and BD4 of PBRM1 mediate binding to acetylated histone peptides and to modified recombinant and cellular nucleosomes. Moreover, we show that neighboring BDs variably modulate these chromatin interactions, with BD1 and BD5 enhancing nucleosome interactions of BD2 and BD4, respectively, whereas BD3 attenuated these interactions. We also found that binding pocket missense mutations in BD4 observed in ccRCC disrupt PBRM1-chromatin interactions and that these mutations in BD4, but not similar mutations in BD2, in the context of full-length PBRM1, accelerate ccRCC cell proliferation. Taken together, our biochemical and mutational analyses have identified BD4 as being critically important for maintaining proper PBRM1 function and demonstrate that BD4 mutations increase ccRCC cell growth. Because of the link between PBRM1 status and sensitivity to immune checkpoint inhibitor treatment, these data also suggest the relevance of BD4 as a potential clinical target.
染色质重塑器使用溴结构域 (BD) 来识别组蛋白。多溴 1 (PBRM1 或 BAF180) 被假设为 PBAF 染色质重塑复合物的核小体识别亚基,并且在透明细胞肾细胞癌 (ccRCC) 中经常发生突变。以前的研究已经应用了多种方法来探索六个单独的 PBRM1 BD 的结合特异性。然而,BD 对组蛋白的靶向作用以及相邻 BD 对核小体识别的影响尚未得到很好的描述。在这里,我们使用组蛋白微阵列和完整核小体来单独和组合研究六个 PBRM1 BD 的组蛋白结合特性,我们证明 PBRM1 的 BD2 和 BD4 介导与乙酰化组蛋白肽和修饰的重组和细胞核小体的结合。此外,我们表明相邻的 BD 以不同的方式调节这些染色质相互作用,BD1 和 BD5 分别增强 BD2 和 BD4 的核小体相互作用,而 BD3 减弱这些相互作用。我们还发现,在 ccRCC 中观察到的 BD4 结合口袋错义突变破坏了 PBRM1-染色质相互作用,并且这些突变在 BD4 中,而不是在全长 PBRM1 中的 BD2 中,加速了 ccRCC 细胞增殖。总之,我们的生化和突变分析确定 BD4 对于维持适当的 PBRM1 功能至关重要,并证明 BD4 突变增加了 ccRCC 细胞的生长。由于 PBRM1 状态与免疫检查点抑制剂治疗敏感性之间的联系,这些数据还表明 BD4 作为潜在的临床靶点具有相关性。