• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

高通量酵母基因组标签的全基因组 C-SWAT 文库。

Genome-wide C-SWAT library for high-throughput yeast genome tagging.

机构信息

Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), DKFZ-ZMBH Alliance, Heidelberg, Germany.

Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.

出版信息

Nat Methods. 2018 Aug;15(8):598-600. doi: 10.1038/s41592-018-0045-8. Epub 2018 Jul 9.

DOI:10.1038/s41592-018-0045-8
PMID:29988096
Abstract

Here we describe a C-SWAT library for high-throughput tagging of Saccharomyces cerevisiae open reading frames (ORFs). In 5,661 strains, we inserted an acceptor module after each ORF that can be efficiently replaced with tags or regulatory elements. We validated the library with targeted sequencing and tagged the proteome with bright fluorescent proteins to quantify the effect of heterologous transcription terminators on protein expression and to localize previously undetected proteins.

摘要

我们在这里描述了一个用于高通量标记酿酒酵母开放阅读框(ORF)的 C-SWAT 文库。在 5661 个菌株中,我们在每个 ORF 后插入了一个接受模块,该模块可以有效地被标签或调控元件替换。我们通过靶向测序对文库进行了验证,并使用明亮的荧光蛋白标记了蛋白质组,以量化异源转录终止子对蛋白质表达的影响,并定位以前未检测到的蛋白质。

相似文献

1
Genome-wide C-SWAT library for high-throughput yeast genome tagging.高通量酵母基因组标签的全基因组 C-SWAT 文库。
Nat Methods. 2018 Aug;15(8):598-600. doi: 10.1038/s41592-018-0045-8. Epub 2018 Jul 9.
2
Genome-wide SWAp-Tag yeast libraries for proteome exploration.用于蛋白质组探索的全基因组 SWAp-Tag 酵母文库。
Nat Methods. 2018 Aug;15(8):617-622. doi: 10.1038/s41592-018-0044-9. Epub 2018 Jul 9.
3
Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.构建一个接近完整的、经过序列验证的酿酒酵母蛋白质编码克隆文库。
Genome Res. 2007 Apr;17(4):536-43. doi: 10.1101/gr.6037607. Epub 2007 Feb 23.
4
Playing tag with the yeast proteome.与酵母蛋白质组玩捉迷藏
Nat Biotechnol. 2003 Nov;21(11):1297-9. doi: 10.1038/nbt1103-1297.
5
Proteomics: where's Waldo in yeast?蛋白质组学:酵母中的“沃尔多在哪里”? (注:“沃尔多在哪里”是一套寻找隐藏人物的儿童益智图画书,这里用此比喻在酵母中寻找特定蛋白质等相关研究如同在书中找沃尔多一样具有挑战性和探索性 )
Nature. 2003 Oct 16;425(6959):671-2. doi: 10.1038/425671a.
6
Proteome survey reveals modularity of the yeast cell machinery.蛋白质组研究揭示酵母细胞机制的模块化特性。
Nature. 2006 Mar 30;440(7084):631-6. doi: 10.1038/nature04532. Epub 2006 Jan 22.
7
Single-read sequence tags of a limited number of genomic DNA fragments provide an inexpensive tool for comparative genome analysis.有限数量基因组DNA片段的单读序列标签为比较基因组分析提供了一种低成本工具。
Yeast. 1998 Oct;14(14):1327-32. doi: 10.1002/(SICI)1097-0061(1998100)14:14<1327::AID-YEA321>3.0.CO;2-L.
8
High-throughput creation and functional profiling of DNA sequence variant libraries using CRISPR-Cas9 in yeast.利用 CRISPR-Cas9 在酵母中高通量创建和功能分析 DNA 序列变异文库。
Nat Biotechnol. 2018 Jul;36(6):540-546. doi: 10.1038/nbt.4147. Epub 2018 May 21.
9
The DNA sequence of cosmid 14-13b from chromosome XIV of Saccharomyces cerevisiae reveals an unusually high number of overlapping open reading frames.来自酿酒酵母第十四条染色体的黏粒14 - 13b的DNA序列显示出异常大量的重叠开放阅读框。
Yeast. 1997 Mar 15;13(3):261-6. doi: 10.1002/(SICI)1097-0061(19970315)13:3<261::AID-YEA64>3.0.CO;2-L.
10
Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe.酿酒酵母和粟酒裂殖酵母中通过一步转化和两步筛选实现无疤痕基因标记
PLoS One. 2016 Oct 13;11(10):e0163950. doi: 10.1371/journal.pone.0163950. eCollection 2016.

引用本文的文献

1
Mutation-induced filaments of folded proteins are inert and non-toxic in a cellular system.在细胞系统中,折叠蛋白的突变诱导细丝是无活性且无毒的。
Mol Syst Biol. 2025 Sep 15. doi: 10.1038/s44320-025-00144-y.
2
A tetracycline-inducible Split TurboID system for specific biotinylation and identification of nuclear proteins from HEK293T cells.一种用于特异性生物素化和鉴定来自HEK293T细胞的核蛋白的四环素诱导型分裂TurboID系统。
Turk J Biol. 2025 Jan 6;49(2):162-174. doi: 10.55730/1300-0152.2734. eCollection 2025.
3
Profiling the LAM Family of Contact Site Tethers Provides Insights into Their Regulation and Function.
分析接触位点系链的LAM家族可深入了解其调控和功能。
Contact (Thousand Oaks). 2025 Apr 17;8:25152564251321770. doi: 10.1177/25152564251321770. eCollection 2025 Jan-Dec.
4
Vacuoles provide the source membrane for TORC1-containing signaling endosomes.液泡为含TORC1的信号内体提供来源膜。
J Cell Biol. 2025 May 5;224(5). doi: 10.1083/jcb.202407021. Epub 2025 Mar 7.
5
Integrative Omics reveals changes in the cellular landscape of peroxisome-deficient yeast cells.整合组学揭示了过氧化物酶体缺陷酵母细胞的细胞格局变化。
Microb Cell. 2025 Feb 20;12:9-33. doi: 10.15698/mic2025.02.842. eCollection 2025.
6
The formation of chaperone-rich GET bodies depends on the tetratricopeptide repeat region of Sgt2 and is reversed by NADH.富含分子伴侣的GET小体的形成取决于Sgt2的四肽重复区域,并可被NADH逆转。
J Cell Sci. 2025 Mar 15;138(6). doi: 10.1242/jcs.263616. Epub 2025 Mar 20.
7
An avoidance segment resolves a lethal nuclear-mitochondrial targeting conflict during ribosome assembly.一个回避片段在核糖体组装过程中解决了致命的核-线粒体靶向冲突。
Nat Cell Biol. 2025 Feb;27(2):336-346. doi: 10.1038/s41556-024-01588-4. Epub 2025 Jan 31.
8
Genome-wide conditional degron libraries for functional genomics.用于功能基因组学的全基因组条件性降解子文库。
J Cell Biol. 2025 Feb 3;224(2). doi: 10.1083/jcb.202409007. Epub 2024 Dec 18.
9
A proteome-wide yeast degron collection for the dynamic study of protein function.用于蛋白质功能动态研究的全蛋白质组酵母降解子文库。
J Cell Biol. 2025 Feb 3;224(2). doi: 10.1083/jcb.202409050. Epub 2024 Dec 18.
10
Accurate and sensitive interactome profiling using a quantitative protein-fragment complementation assay.使用定量蛋白质片段互补测定法进行准确且灵敏的互作组谱分析。
Cell Rep Methods. 2024 Oct 21;4(10):100880. doi: 10.1016/j.crmeth.2024.100880.