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鉴定和分析人类性别偏倚的 microRNAs。

Identification and Analysis of Human Sex-biased MicroRNAs.

机构信息

Department of Biomedical Informatics, Department of Physiology and Pathophysiology, Center for Noncoding RNA Medicine, MOE Key Laboratory of Cardiovascular Sciences, School of Basic Medical Sciences, Peking University, Beijing 100191, China.

Department of Physiology and Pathophysiology, Center for Noncoding RNA Medicine, School of Basic Medical Sciences, Peking University, Beijing 100191, China.

出版信息

Genomics Proteomics Bioinformatics. 2018 Jun;16(3):200-211. doi: 10.1016/j.gpb.2018.03.004. Epub 2018 Jul 11.

Abstract

Sex differences are widely observed under various circumstances ranging from physiological processes to therapeutic responses, and a myriad of sex-biased genes have been identified. In recent years, transcriptomic datasets of microRNAs (miRNAs), an important class of non-coding RNAs, become increasingly accessible. However, comprehensive analysis of sex difference in miRNA expression has not been performed. Here, we identified the differentially-expressed miRNAs between males and females by examining the transcriptomic datasets available in public databases and conducted a systemic analysis of their biological characteristics. Consequently, we identified 73 female-biased miRNAs (FmiRs) and 163 male-biased miRNAs (MmiRs) across four tissues including brain, colorectal mucosa, peripheral blood, and cord blood. Our results suggest that compared to FmiRs, MmiRs tend to be clustered in the human genome and exhibit higher evolutionary rate, higher expression tissue specificity, and lower disease spectrum width. In addition, functional enrichment analysis of miRNAs show that FmiR genes are significantly associated with metabolism process and cell cycle process, whereas MmiR genes tend to be enriched for functions like histone modification and circadian rhythm. In all, the identification and analysis of sex-biased miRNAs together could provide new insights into the biological differences between females and males and facilitate the exploration of sex-biased disease susceptibility and therapy.

摘要

性别差异在各种情况下广泛存在,从生理过程到治疗反应都有性别差异,并且已经鉴定出了大量的性别偏向基因。近年来,miRNA(miRNAs)的转录组数据集越来越容易获得,miRNAs 是一类重要的非编码 RNA。然而,miRNA 表达的性别差异的综合分析尚未进行。在这里,我们通过检查公共数据库中可用的转录组数据集,鉴定了男性和女性之间差异表达的 miRNA,并对其生物学特性进行了系统分析。结果,我们在包括大脑、结直肠黏膜、外周血和脐带血在内的四种组织中鉴定出了 73 个雌性偏向 miRNA(FmiRs)和 163 个雄性偏向 miRNA(MmiRs)。我们的结果表明,与 FmiRs 相比,MmiRs 倾向于在人类基因组中聚类,并且表现出更高的进化率、更高的组织表达特异性和更低的疾病谱宽度。此外,miRNA 的功能富集分析表明,FmiR 基因与代谢过程和细胞周期过程显著相关,而 MmiR 基因则倾向于富集组蛋白修饰和昼夜节律等功能。总之,对性别偏向 miRNA 的鉴定和分析可以为女性和男性之间的生物学差异提供新的见解,并有助于探索性别偏向的疾病易感性和治疗方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2567/6076379/12d9f9494f93/gr1.jpg

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