Department of Biotechnology, National Institute of Pharmaceutical Education and Research, Sector 67, SAS Nagar, Mohali 160062, Punjab, India.
Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research, Sector 67, SAS Nagar, Mohali 160062, Punjab, India.
Int J Biol Macromol. 2018 Nov;119:320-334. doi: 10.1016/j.ijbiomac.2018.07.095. Epub 2018 Jul 18.
Pyridoxal kinase (PdxK, EC 2.7.1.35) is an important enzyme of vitamin B6 salvage pathway which is required for phosphorylation of B6 vitamers. In the present study, pyridoxal kinase (pdxK) gene from Leishmania donovani (LdPdxK) was cloned and a 33 kDa protein was expressed and kinetically characterized. Site-directed mutagenesis was performed to determine the functional significance of conserved GXGD motif. Mutation of Thr229 to Ala did not affect the catalytic function of LdPdxK however Gly228, Gly230 and Asp231 were found to be indispensible for enzyme activity. To determine the role of LdPdxK in Leishmania promastigotes, LdPdxK overexpressing parasites were generated by episomal expression of the enzyme. The overexpression studies revealed the role of this enzyme in growth and infection of the parasite. In silico analysis of the human and parasite PdxK structure revealed significant differences in the active site region thus highlighting its potential as an antileishmanial drug target. Homology model of LdPdxK was built and was subjected to molecular dynamics simulations. Based on the above information, a pharmacophore was developed and shape based virtual screening was performed to identify potential and selective inhibitors against this essential enzyme. The current data suggests that LdPdxK could be a promising antileishmanial drug target.
吡哆醛激酶(PdxK,EC 2.7.1.35)是维生素 B6 补救途径的重要酶,是 B6 维生素磷酸化所必需的。在本研究中,从利什曼原虫(LdPdxK)中克隆了吡哆醛激酶(pdxK)基因,并表达和动力学表征了 33 kDa 的蛋白质。进行了定点突变以确定保守的 GXGD 基序的功能意义。将 Thr229 突变为 Ala 不会影响 LdPdxK 的催化功能,但是发现 Gly228、Gly230 和 Asp231 对于酶活性是不可或缺的。为了确定 LdPdxK 在利什曼原虫前鞭毛体中的作用,通过酶的附加体表达生成了 LdPdxK 过表达寄生虫。过表达研究揭示了该酶在寄生虫的生长和感染中的作用。人源和寄生虫 PdxK 结构的计算机分析揭示了活性位点区域的显著差异,从而突出了其作为抗利什曼原虫药物靶点的潜力。构建了 LdPdxK 的同源模型,并进行了分子动力学模拟。基于上述信息,开发了药效基团,并进行了基于形状的虚拟筛选,以鉴定针对这种必需酶的潜在和选择性抑制剂。目前的数据表明,LdPdxK 可能是一种有前途的抗利什曼原虫药物靶点。