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棘冠海星:从珊瑚礁瘟疫到模式生物系统

The Crown-of-Thorns Starfish: From Coral Reef Plague to Model System.

作者信息

Baughman Kenneth W

机构信息

Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.

出版信息

Results Probl Cell Differ. 2018;65:547-568. doi: 10.1007/978-3-319-92486-1_24.

Abstract

Acanthaster planci, commonly known as the "crown-of-thorns starfish" (COTS) are famous for decimating coral reefs, yet the unique features of the COTS genome make the starfish a useful system for genomic and evolutionary developmental research. The COTS genome assembly is an order of magnitude more highly contiguous than other recently sequenced echinoderm genome assemblies. The high resolution of the COTS assembly is likely related to low heterozygosity resulting from historical population dynamics and possibly a recent population expansion. The high-resolution genome assembly is biologically meaningful, as confirmed by the discovery of several intact gene clusters. Therefore, the COTS genome is an ideal testing ground for new genomic technologies and bioinformatics tools.

摘要

棘冠海星,通常被称为“刺冠海星”(COTS),以破坏珊瑚礁而闻名,但刺冠海星基因组的独特特征使其成为基因组学和进化发育研究的有用系统。与其他最近测序的棘皮动物基因组组装相比,刺冠海星的基因组组装的连续性要高一个数量级。刺冠海星组装的高分辨率可能与历史种群动态导致的低杂合度有关,也可能与最近的种群扩张有关。如发现的几个完整基因簇所证实,高分辨率的基因组组装具有生物学意义。因此,刺冠海星基因组是新基因组技术和生物信息学工具的理想试验场。

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