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合成生物学的挑战。合成达尔文主义与非周期性晶体结构。

The challenge of synthetic biology. Synthetic Darwinism and the aperiodic crystal structure.

机构信息

Foundation for Applied Molecular Evolution (FfAME), 13709 Progress Boulevard, Box 7, Alachua, FL 32615, United States.

Foundation for Applied Molecular Evolution (FfAME), 13709 Progress Boulevard, Box 7, Alachua, FL 32615, United States; Firebird Biomolecular Sciences LLC, 13709 Progress Boulevard, Box 17, Alachua, FL 32615, United States.

出版信息

Curr Opin Chem Biol. 2018 Oct;46:188-195. doi: 10.1016/j.cbpa.2018.07.008. Epub 2018 Aug 9.

DOI:10.1016/j.cbpa.2018.07.008
PMID:30098527
Abstract

'Grand Challenges' offer ways to discover flaws in existing theory without first needing to guess what those flaws are. Our grand challenge here is to reproduce the Darwinism of terran biology, but on molecular platforms different from standard DNA. Access to Darwinism distinguishes the living from the non-living state. However, theory suggests that any biopolymer able to support Darwinism must (a) be able to form Schrödinger's `aperiodic crystal', where different molecular components pack into a single crystal lattice, and (b) have a polyelectrolyte backbone. In 1953, the descriptive biology of Watson and Crick suggested DNA met Schrödinger's criertion, forming a linear crystal with geometrically similar building blocks supported on a polyelectrolye backbone. At the center of genetics were nucleobase pairs that fit into that crystal lattice by having both size complementarity and hydrogen bonding complementarity to enforce a constant geometry. This review covers experiments that show that by adhering to these two structural rules, the aperiodic crystal structure is maintained in DNA having 6 (or more) components. Further, this molecular system is shown to support Darwinism. Together with a deeper understanding of the role played in crystal formation by the poly-charged backbone and the intervening scaffolding, these results define how we might search for Darwinism, and therefore life, on Mars, Europa, Enceladus, and other watery lagoons in our Solar System.

摘要

“大挑战”提供了一种方法,可以在不需要猜测缺陷是什么的情况下发现现有理论中的缺陷。我们这里的大挑战是在与标准 DNA 不同的分子平台上再现地球生物学的达尔文主义。对达尔文主义的了解将有生命的状态与无生命的状态区分开来。然而,理论表明,任何能够支持达尔文主义的生物聚合物必须 (a) 能够形成薛定谔的“无定形晶体”,其中不同的分子成分组装成单个晶格,以及 (b) 具有聚电解质骨架。1953 年,沃森和克里克的描述生物学表明,DNA 符合薛定谔的标准,形成具有几何相似构建块的线性晶体,支撑在聚电解质骨架上。在遗传学的核心是核碱基对,它们通过大小互补和氢键互补来适应这个晶体晶格,以强制保持恒定的几何形状。这篇综述涵盖了实验表明,通过遵守这两个结构规则,具有 6(或更多)个成分的 DNA 中的无定形晶体结构得以维持。此外,这个分子系统被证明支持达尔文主义。结合对多电荷骨架和间隔支架在晶体形成中所起作用的更深入理解,这些结果定义了我们如何在火星、木卫二、土卫二和我们太阳系中的其他水洼中寻找达尔文主义,从而寻找生命。

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