School of Life and Environmental Sciences, University of Sydney, Sydney, NSW 2006, Australia.
Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Biochem Soc Trans. 2018 Oct 19;46(5):1183-1190. doi: 10.1042/BST20180186. Epub 2018 Aug 28.
The molecular clock provides a valuable means of estimating evolutionary timescales from genetic and biochemical data. Proposed in the early 1960s, it was first applied to amino acid sequences and immunological measures of genetic distances between species. The molecular clock has undergone considerable development over the years, and it retains profound relevance in the genomic era. In this mini-review, we describe the history of the molecular clock, its impact on evolutionary theory, the challenges brought by evidence of evolutionary rate variation among species, and the statistical models that have been developed to account for these heterogeneous rates of genetic change. We explain how the molecular clock can be used to infer rates and timescales of evolution, and we list some of the key findings that have been obtained when molecular clocks have been applied to genomic data. Despite the numerous challenges that it has faced over the decades, the molecular clock continues to offer the most effective method of resolving the details of the evolutionary timescale of the Tree of Life.
分子钟为从遗传和生化数据估计进化时间尺度提供了一种有价值的手段。它于 20 世纪 60 年代初提出,最初应用于氨基酸序列和物种间遗传距离的免疫学测量。多年来,分子钟经历了相当大的发展,并且在基因组时代仍然具有深远的相关性。在这篇迷你评论中,我们描述了分子钟的历史、它对进化理论的影响、物种间进化速度变化的证据带来的挑战,以及为解释这些遗传变化异质性速率而开发的统计模型。我们解释了如何使用分子钟来推断进化的速率和时间尺度,并且列出了当分子钟应用于基因组数据时获得的一些关键发现。尽管在过去几十年中面临着许多挑战,但分子钟仍然提供了最有效的方法来解决生命之树进化时间尺度的细节问题。