Pawar Shrikant, Yao Xiangyu, Lu Chung-Dar
Department of Computer Science, Georgia State University, 33 Gilmer Street SE, Atlanta, GA, 30303, USA.
Department of Biology, Georgia State University, 33 Gilmer Street SE, Atlanta, GA, 30303, USA.
Genes Genomics. 2019 Jan;41(1):43-59. doi: 10.1007/s13258-018-0735-8. Epub 2018 Sep 18.
Methicillin-resistant Staphylococcus aureus (MRSA) is a rapidly emerging bacteria causing infection, which has developed resistance to most of the beta-lactam antibiotics because of newly acquired low-affinity penicillin-binding protein (PBP2a), which can continue to build the cell wall when beta-lactams block other PBPs. Exogenous spermine exerts a dose-dependent inhibition effect on the growth of Escherichia coli, Salmonella enterica serovar, and S. aureus. Selection of an MRSA Mu50 derivative which harbors mutation on PBP2 gene (named as MuM) showing spermine resistance and which confers a complete abolishment of spermine-beta-lactam synergy was identified. To further investigate the gene expression changes, a transcriptome profiling of MuM against Mu50 (wild-type) without any treatment, MuM and Mu50 in response to high dose spermine and Mu50 in response to spermine-beta-lactam synergy at 15, 30 and 60 min time points was performed. Functional annotation was further performed to delineate the metabolic pathways associated with the significant genes. A significant down-regulation in the iron regulatory system, potassium channel uptake and polyamine transport system with an up-regulation in general stress response sigB dependent operon in MuM strain at 15, 30 and 60 min time points with spermine treatment compared to Mu50 strain was observed. Analysis of spermine-dependent synergy with beta-lactams on cell wall synthesis revealed that it significantly reduces the degree of cross-linkage on cell wall with no change in trypsin digestion pattern of purified PBPs and without affecting PBPs expression or PBPs acylation by Bocillin. A strong relation between PBP2 protein and general stress sigB response, iron, potassium and polyamine transport systems was observed. SigB regulon should be activated on stress, which was not seen in some of our previous studies where it was down-regulated in wild-type Mu50 strain with spermine stress. Here, an intriguing finding is made where there seems to be a correction of this abnormal response of no SigB induction to a significant induction by PBP2 mutation. In MuM strain, a significant down-regulation of KdpABC operon genes at 15, 30 and 60 min time points on spermine stress is seen, which seems to be absent without spermine treatment. Since KCL has been found to protect the cell against spermine stress in wild-type strain by induction of KdpABC operon, it fails to do so in MuM strain underlying the importance of PBP2 protein in spermine stress. Analysis of spermine-dependent synergy with beta-lactams on cell wall synthesis revealed that it significantly reduces the degree of cross-linkage on cell wall with no change in trypsin digestion patterns of purified PBPs and without affecting PBPs expression or PBPs acylation by Bocillin. Furthermore, spermine does not help in enhancing the binding of beta-lactams to PBPs and binding of spermine to PBPs does not cause conformational changes to PBPs, as tested with trypsin digestion patterns. Future studies on the molecular mechanism of spermine interactions with these systems hold great potential for the development of new therapeutics for MRSA infections.
耐甲氧西林金黄色葡萄球菌(MRSA)是一种迅速出现的可导致感染的细菌,由于新获得了低亲和力青霉素结合蛋白(PBP2a),它对大多数β-内酰胺类抗生素产生了耐药性,当β-内酰胺类药物阻断其他青霉素结合蛋白时,PBP2a仍可继续构建细胞壁。外源性精胺对大肠杆菌、肠炎沙门氏菌血清型和金黄色葡萄球菌的生长具有剂量依赖性抑制作用。我们筛选出了一株MRSA Mu50衍生物(命名为MuM),该菌株的PBP2基因发生了突变,表现出对精胺的抗性,并且完全消除了精胺-β-内酰胺协同作用。为了进一步研究基因表达的变化,我们对MuM与未处理的Mu50(野生型)、MuM和Mu50在高剂量精胺作用下以及Mu50在精胺-β-内酰胺协同作用下,分别在15、30和60分钟时间点进行了转录组分析。进一步进行功能注释以描绘与重要基因相关的代谢途径。与Mu50菌株相比,在精胺处理的15、30和60分钟时间点,MuM菌株中铁调节系统、钾通道摄取和多胺转运系统显著下调,而一般应激反应sigB依赖性操纵子上调。对精胺与β-内酰胺在细胞壁合成上的协同作用分析表明,它显著降低了细胞壁的交联程度,纯化的青霉素结合蛋白的胰蛋白酶消化模式没有变化,也不影响青霉素结合蛋白的表达或Bocillin对青霉素结合蛋白的酰化作用。观察到PBP2蛋白与一般应激sigB反应、铁、钾和多胺转运系统之间存在密切关系。在应激状态下,SigB调节子应该被激活,而在我们之前的一些研究中并非如此,在那些研究中野生型Mu50菌株在精胺应激下SigB调节子被下调。在这里,我们有一个有趣的发现,似乎通过PBP2突变纠正了这种对SigB诱导无反应的异常反应,变为显著诱导。在MuM菌株中,在精胺应激下,15、30和60分钟时间点KdpABC操纵子基因显著下调,而在没有精胺处理时似乎不存在这种情况。由于已发现氯化钾通过诱导KdpABC操纵子保护野生型菌株细胞免受精胺应激,而在MuM菌株中却无法做到,这突出了PBP2蛋白在精胺应激中的重要性。对精胺与β-内酰胺在细胞壁合成上的协同作用分析表明,它显著降低了细胞壁的交联程度,纯化的青霉素结合蛋白的胰蛋白酶消化模式没有变化,也不影响青霉素结合蛋白的表达或Bocillin对青霉素结合蛋白的酰化作用。此外,精胺无助于增强β-内酰胺与青霉素结合蛋白的结合,并且精胺与青霉素结合蛋白的结合不会导致青霉素结合蛋白的构象变化,这通过胰蛋白酶消化模式得到了验证。未来关于精胺与这些系统相互作用分子机制的研究对于开发针对MRSA感染的新疗法具有巨大潜力。