• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

探究构象灵活肽中溶剂化诱导的结构变化:甘氨酸氢化物·(水)的红外光谱

Probing Solvation-Induced Structural Changes in Conformationally Flexible Peptides: IR Spectroscopy of GlyH·(HO).

作者信息

Fischer Kaitlyn C, Voss Jonathan M, Zhou Jia, Garand Etienne

机构信息

Department of Chemistry , University of Wisconsin-Madison , 1101 University Ave. , Madison , Wisconsin 53706 , United States.

出版信息

J Phys Chem A. 2018 Oct 18;122(41):8213-8221. doi: 10.1021/acs.jpca.8b07546. Epub 2018 Oct 4.

DOI:10.1021/acs.jpca.8b07546
PMID:30240217
Abstract

IR predissociation spectroscopy of the GlyH(HO) complex formed inside of a cryogenic ion trap reveals how the flexible model peptide structurally responds to solvation by a single water molecule. The resulting one-laser spectrum is quite congested, and the spectral analyses were assisted by both HO/DO substitution and IR-IR double resonance spectroscopy, revealing the presence of two contributing isomers and extensive anharmonic features. Comparisons to structures found via a systematic computational search identified the geometries of these two isomers. The major isomer, with all trans amide bonds and protonation on the terminal amine, represents ∼90% of the overall population. It noticeably differs from the unsolvated GlyH, which exists in two isomeric forms: one with a cis amide bond and the other with protonation on an amide C═O. These results indicate that interactions with just one water molecule can induce significant structural changes, i.e., cis- trans amide bond rotation and proton migration, even as the clustering occurs within an 80 K cryogenic ion trap. Calculations of the isomerization pathways further reveal that the binding energy of the water molecule provides sufficient internal energy to overcome the barriers for the observed structural changes, and the minor solvation isomer results from a small fraction of the ions being kinetically trapped along one of the pathways.

摘要

低温离子阱内形成的GlyH(HO)络合物的红外预解离光谱揭示了柔性模型肽如何在结构上响应单个水分子的溶剂化作用。由此产生的单激光光谱相当拥挤,光谱分析借助了HO/DO取代和红外-红外双共振光谱,揭示了两种有贡献的异构体的存在以及广泛的非谐特征。与通过系统计算搜索找到的结构进行比较,确定了这两种异构体的几何结构。主要异构体具有全反式酰胺键且末端胺基质子化,占总体的约90%。它与未溶剂化的GlyH明显不同,未溶剂化的GlyH存在两种异构体形式:一种具有顺式酰胺键,另一种酰胺C═O质子化。这些结果表明,即使聚集发生在80K的低温离子阱内,与单个水分子的相互作用也能引发显著的结构变化,即顺反酰胺键旋转和质子迁移。异构体化途径的计算进一步表明,水分子的结合能提供了足够的内能来克服观察到的结构变化的障碍,次要的溶剂化异构体是一小部分离子沿其中一条途径被动力学捕获的结果。

相似文献

1
Probing Solvation-Induced Structural Changes in Conformationally Flexible Peptides: IR Spectroscopy of GlyH·(HO).探究构象灵活肽中溶剂化诱导的结构变化:甘氨酸氢化物·(水)的红外光谱
J Phys Chem A. 2018 Oct 18;122(41):8213-8221. doi: 10.1021/acs.jpca.8b07546. Epub 2018 Oct 4.
2
Protonation sites and conformations of peptides of glycine (Gly(1-5)H(+)) by IRMPD spectroscopy.通过红外多光子解离光谱法研究甘氨酸肽(Gly(1-5)H(+))的质子化位点和构象。
J Phys Chem B. 2009 Jun 25;113(25):8767-75. doi: 10.1021/jp811468q.
3
Microhydration of Biomolecules: Revealing the Native Structures by Cold Ion IR Spectroscopy.生物分子的微水合作用:通过冷离子红外光谱揭示其天然结构。
J Phys Chem Lett. 2021 Jan 21;12(2):907-911. doi: 10.1021/acs.jpclett.0c03678. Epub 2021 Jan 13.
4
Using 2D-IR Spectroscopy to Measure the Structure, Dynamics, and Intermolecular Interactions of Proteins in HO.使用二维红外光谱测量 HO 中蛋白质的结构、动态和分子间相互作用。
Acc Chem Res. 2024 Mar 5;57(5):685-692. doi: 10.1021/acs.accounts.3c00682. Epub 2024 Feb 16.
5
Intramolecular hydrogen bonding motifs in deprotonated glycine peptides by cryogenic ion infrared spectroscopy.
J Phys Chem A. 2014 Jun 5;118(22):3906-12. doi: 10.1021/jp501936b. Epub 2014 May 21.
6
Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap.低温离子阱中制备的 D2 标记质子化二肽的异构体特异性红外 - 红外双共振光谱
J Phys Chem Lett. 2012 May 3;3(9):1099-105. doi: 10.1021/jz3003074. Epub 2012 Apr 12.
7
Cyclization and rearrangement reactions of a(n) fragment ions of protonated peptides.质子化肽的(n)片段离子的环化和重排反应。
J Am Chem Soc. 2010 Oct 27;132(42):14766-79. doi: 10.1021/ja101556g.
8
Infrared and vibrational CD spectra of partially solvated alpha-helices: DFT-based simulations with explicit solvent.部分溶剂化α-螺旋的红外和振动圆二色光谱:基于密度泛函理论的显式溶剂模拟
J Phys Chem B. 2007 Feb 22;111(7):1834-45. doi: 10.1021/jp0666840. Epub 2007 Jan 26.
9
Solvation properties of N-substituted cis and trans amides are not identical: significant enthalpy and entropy changes are revealed by the use of variable temperature 1H NMR in aqueous and chloroform solutions and ab initio calculations.N-取代的顺式和反式酰胺的溶剂化性质并不相同:通过在水溶液和氯仿溶液中使用变温1H NMR以及从头算计算揭示了显著的焓变和熵变。
J Phys Chem A. 2005 Dec 29;109(51):11878-84. doi: 10.1021/jp0537557.
10
Isolated monohydrates of a model peptide chain: effect of a first water molecule on the secondary structure of a capped phenylalanine.模型肽链的一水合物:第一个水分子对封端苯丙氨酸二级结构的影响。
J Am Chem Soc. 2011 Mar 23;133(11):3931-42. doi: 10.1021/ja108643p. Epub 2011 Feb 28.

引用本文的文献

1
Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain.气相中性肽的红外光谱学:远红外和太赫兹区域的新见解。
Chem Rev. 2020 Apr 8;120(7):3233-3260. doi: 10.1021/acs.chemrev.9b00547. Epub 2020 Feb 19.