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人类和线虫秀丽隐杆线虫的比较基因组分析揭示了人类潜在的生殖基因和疾病关联。

Comparative genomic analysis of the human and nematode Caenorhabditis elegans uncovers potential reproductive genes and disease associations in humans.

机构信息

Department of Biomedical Science, College of Life Science, CHA University, Seongnam-si, Gyeonggi-do, Republic of Korea.

出版信息

Physiol Genomics. 2018 Nov 1;50(11):1002-1014. doi: 10.1152/physiolgenomics.00063.2018. Epub 2018 Sep 21.

Abstract

Reproduction is an important biological process. However, studies of human reproduction at the molecular level are limited due to the difficulty of performing in vivo studies. Hence, a mechanistic understanding of human reproduction remains still poor. Thus, it is important to use an alternative model organism for mechanistic studies of human reproduction. In this study, we used the nematode Caenorhabditis elegans as a model for studying human reproduction and identified 61 human and 535 worm reproductive genes through a combination of comparative genomic and Gene Ontology (GO) analyses. Interestingly, in terms of sex specificity, the number of male-specific genes was greater than the number of female-specific genes. Gene enrichment analysis identified biologically significant processes such as protein localization to cajal bodies/telomeres/nuclear bodies/chromosomes, helicase activity, pyrimidine biosynthesis, and determination of adult lifespan. Regarding the analysis of human reproductive diseases among the identified genes, 10 and 12 genes were identified in the human- and C. elegans-based analyses, respectively. In addition, RNA interference knockdown of a newly identified F52H2.6/DHCR24 gene increased brood size and ovulation/egg-laying rate in C. elegans. Therefore, gene identification, disease associations, and a proof-of-concept experiment using C. elegans will not only provide insights into mechanistic study of human reproduction, but also demonstrate the utility in studying human reproduction.

摘要

生殖是一个重要的生物学过程。然而,由于进行体内研究的难度,人类生殖的分子水平研究受到限制。因此,人类生殖的机制理解仍然很差。因此,使用替代的模式生物来进行人类生殖的机制研究非常重要。在本研究中,我们使用线虫 Caenorhabditis elegans 作为研究人类生殖的模型,通过比较基因组学和基因本体论 (GO) 分析,鉴定了 61 个人类和 535 个蠕虫生殖基因。有趣的是,就性别特异性而言,雄性特异性基因的数量多于雌性特异性基因。基因富集分析确定了具有生物学意义的过程,如蛋白质定位于 Cajal 体/端粒/核体/染色体、解旋酶活性、嘧啶生物合成和决定成虫寿命。关于鉴定的基因中人类生殖疾病的分析,在人类和 C. elegans 分析中分别鉴定出 10 个和 12 个基因。此外,新鉴定的 F52H2.6/DHCR24 基因的 RNA 干扰敲低增加了 C. elegans 的产卵量和排卵/产卵率。因此,使用 C. elegans 进行基因鉴定、疾病关联和概念验证实验不仅将为人类生殖的机制研究提供深入的见解,还将证明其在研究人类生殖中的实用性。

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