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底物结合变构缓解了假激酶 TRIB1 的自动抑制。

Substrate binding allosterically relieves autoinhibition of the pseudokinase TRIB1.

机构信息

Biochemistry Department, School of Biomedical Sciences, University of Otago, P.O. Box 56, 710 Cumberland Street, Dunedin 9054, New Zealand.

Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.

出版信息

Sci Signal. 2018 Sep 25;11(549):eaau0597. doi: 10.1126/scisignal.aau0597.

Abstract

The Tribbles family of pseudokinases recruits substrates to the ubiquitin ligase COP1 to facilitate ubiquitylation. CCAAT/enhancer-binding protein (C/EBP) family transcription factors are crucial Tribbles substrates in adipocyte and myeloid cell development. We found that the TRIB1 pseudokinase was able to recruit various C/EBP family members and that the binding of C/EBPβ was attenuated by phosphorylation. To explain the mechanism of C/EBP recruitment, we solved the crystal structure of TRIB1 in complex with C/EBPα, which revealed that TRIB1 underwent a substantial conformational change relative to its substrate-free structure and bound C/EBPα in a pseudosubstrate-like manner. Crystallographic analysis and molecular dynamics and subsequent biochemical assays showed that C/EBP binding triggered allosteric changes that link substrate recruitment to COP1 binding. These findings offer a view of pseudokinase regulation with striking parallels to bona fide kinase regulation-by means of the activation loop and αC helix-and raise the possibility of small molecules targeting either the activation "loop-in" or "loop-out" conformations of Tribbles pseudokinases.

摘要

TRB1 是一种衔接蛋白,能将 C/EBP 募集到 COP1 泛素连接酶上,从而促进泛素化。CCAAT/增强子结合蛋白(C/EBP)家族转录因子是脂肪细胞和髓系细胞发育过程中 Tribbles 的关键底物。我们发现 TRIB1 假激酶能够募集各种 C/EBP 家族成员,并且 C/EBPβ 的结合可以被磷酸化所减弱。为了解释 C/EBP 募集的机制,我们解析了 TRIB1 与 C/EBPα 复合物的晶体结构,揭示了 TRIB1 相对于其无底物结构发生了很大的构象变化,并以类似伪底物的方式结合 C/EBPα。晶体结构分析、分子动力学和随后的生化分析表明,C/EBP 结合引发了变构变化,将底物募集与 COP1 结合联系起来。这些发现提供了一种假激酶调节的观点,与真正的激酶调节具有惊人的相似之处——通过激活环和αC 螺旋——并提出了针对 Tribbles 假激酶的激活“环内”或“环出”构象的小分子靶向的可能性。

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