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通过使用酶促生成的引物进行连续DNA终止子测序。

Consecutive DNA terminator sequencing by using enzymatically generated primers.

作者信息

Speek M, Ilves H, Lind A

出版信息

Anal Biochem. 1986 Nov 1;158(2):242-9. doi: 10.1016/0003-2697(86)90544-0.

DOI:10.1016/0003-2697(86)90544-0
PMID:3028203
Abstract

An improved strategy for the dideoxy chain termination sequencing of M13 recombinant DNA using enzymatically generated primers is presented. It involves synchronous extension of the universal primer with the Klenow fragment of DNA polymerase I at an average rate of 200 deoxynucleoside triphosphates per minute to the immediate downstream region of a preselected restriction enzyme site. Subsequent cleavage with the restriction enzyme generates the short primers with homogeneous 5' ends which can be used for further sequencing. The next restriction sites are selected in the newly sequenced regions of DNA by means of a microcomputer. By repeating this primer extension-cleavage-sequencing strategy sequences altogether about 6 kb long from several recombinant single-stranded M13 DNAs have been determined by using twenty restriction enzymes with different specificities.

摘要

本文提出了一种改进策略,用于使用酶促生成的引物对M13重组DNA进行双脱氧链终止测序。该策略包括用DNA聚合酶I的Klenow片段以每分钟平均200个脱氧核苷三磷酸的速率同步延伸通用引物至预选限制性酶切位点的紧邻下游区域。随后用限制性酶切割产生具有均一5'端的短引物,可用于进一步测序。通过微型计算机在DNA新测序区域中选择下一个限制性酶切位点。通过重复这种引物延伸-切割-测序策略,使用20种具有不同特异性的限制性酶已确定了来自几个重组单链M13 DNA的总长约6 kb的序列。

相似文献

1
Consecutive DNA terminator sequencing by using enzymatically generated primers.通过使用酶促生成的引物进行连续DNA终止子测序。
Anal Biochem. 1986 Nov 1;158(2):242-9. doi: 10.1016/0003-2697(86)90544-0.
2
Synthesis of a fixed-length single-stranded DNA probe by blocking primer extension in bacteriophage M13.通过在噬菌体M13中阻断引物延伸来合成固定长度的单链DNA探针。
Gene. 1986;42(1):113-7. doi: 10.1016/0378-1119(86)90157-5.
3
Termination sites of the in vitro DNA synthesis on single-stranded DNA photosensitized by promazines.丙嗪光敏化单链DNA上体外DNA合成的终止位点。
J Biol Chem. 1984 Dec 25;259(24):15069-77.
4
Effect of deoxynucleoside phosphorothioates incorporated in DNA on cleavage by restriction enzymes.掺入DNA中的脱氧核苷硫代磷酸酯对限制酶切割的影响。
J Biol Chem. 1982 Jun 10;257(11):6595-9.
5
Multi-priming sequencing: a DNA sequencing method involving restriction enzyme-digested DNA fragments as primers.多重引物测序:一种DNA测序方法,该方法使用经限制性内切酶消化的DNA片段作为引物。
J Biochem. 1992 May;111(5):589-93. doi: 10.1093/oxfordjournals.jbchem.a123802.
6
A fidelity assay using "dideoxy" DNA sequencing: a measurement of sequence dependence and frequency of forming 5-bromouracil X guanine base mispairs.
Proc Natl Acad Sci U S A. 1985 Mar;82(5):1301-5. doi: 10.1073/pnas.82.5.1301.
7
Viable deletions of the M13 complementary strand origin.M13互补链起始位点的可行缺失。
Proc Natl Acad Sci U S A. 1981 Nov;78(11):6784-8. doi: 10.1073/pnas.78.11.6784.
8
"Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method.采用双脱氧链终止法对噬菌体M13进行“非随机”DNA序列分析。
Proc Natl Acad Sci U S A. 1982 Jul;79(14):4298-302. doi: 10.1073/pnas.79.14.4298.
9
Sequencing long DNA fragments cloned in bacteriophage M13 by using internal primers. The sequence analysis of a yeast DNA fragment containing a replication origin.使用内部引物对克隆于噬菌体M13中的长DNA片段进行测序。对一个含有复制起点的酵母DNA片段进行序列分析。
Biochem J. 1981 Dec 1;199(3):819-23. doi: 10.1042/bj1990819.
10
Direct dideoxy DNA sequencing.直接双脱氧DNA测序
Methods Mol Biol. 1988;4:89-101. doi: 10.1385/0-89603-127-6:89.

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