Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments, School of Mechanical Engineering, Southeast University, Nanjing, 210096, China.
Nanoscale. 2018 Nov 7;10(41):19450-19458. doi: 10.1039/c8nr05830j. Epub 2018 Oct 12.
A challenge that remains to be solved in the high-throughput and low-cost nanopore DNA sequencing is that DNA translocates through the nanopore too quickly to be sequenced with enough accuracy. Here, we present a proof of principle study of slowing down DNA translocation across the molybdenum disulfide nanopore and even reversing its translocation direction by adjusting the proportion of molybdenum atoms to sulfur atoms at the nanopore boundary. When the proportion is smaller than 0.17, the electro-osmotic flow moves in the opposite direction to the electric force exerted on the DNA molecule and the more sulfur atoms at the nanopore boundary, the stronger the electro-osmotic flow is. For the nanopore with the proportion equal to 0.17, the electro-osmotic force exerted on DNA is smaller than the electrophoretic force, DNA can be captured and its translocation speed was found to be almost three times smaller than the speed through nanopores with the proportion larger than 0.27. However, for nanopores with the proportion smaller than 0.08, DNA would even be pushed away and prevented from entering the nanopore so that its translocation direction would be reversed. The theoretical study performed here provides a new means for controlling DNA transport dynamics in both translocation velocity and direction, which would facilitate better and cheaper nanopore DNA sequencing in the future.
在高通量、低成本的纳米孔 DNA 测序中,仍然存在一个有待解决的挑战,即 DNA 通过纳米孔的迁移速度太快,无法进行足够准确的测序。在这里,我们提出了一项原理性研究,通过调整纳米孔边界处钼原子与硫原子的比例来减缓 DNA 穿过二硫化钼纳米孔的迁移速度,甚至可以改变其迁移方向。当比例小于 0.17 时,电渗流的流动方向与施加在 DNA 分子上的电场力相反,纳米孔边界处的硫原子越多,电渗流就越强。对于比例等于 0.17 的纳米孔,施加在 DNA 上的电渗流力小于电泳力,DNA 可以被捕获,并且其迁移速度比比例大于 0.27 的纳米孔中的速度慢近三倍。然而,对于比例小于 0.08 的纳米孔,DNA 甚至会被推开并阻止其进入纳米孔,从而导致其迁移方向发生反转。这里进行的理论研究为控制 DNA 输运动力学提供了一种新的手段,无论是在迁移速度还是方向上,这都将有助于未来更好、更廉价的纳米孔 DNA 测序。