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妊娠糖尿病患者母亲和胎盘数据集的分子与疾病关联揭示了氨基酸转运途径中胰岛素生长因子(IGF)基因之间的紧密联系:一种网络生物学方法。

Molecular and disease association of gestational diabetes mellitus affected mother and placental datasets reveal a strong link between insulin growth factor (IGF) genes in amino acid transport pathway: A network biology approach.

作者信息

Rout Madhusmita, Lulu S Sajitha

机构信息

Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.

出版信息

J Cell Biochem. 2019 Feb;120(2):1577-1587. doi: 10.1002/jcb.27418. Epub 2018 Oct 18.

Abstract

Discerning the relationship between molecules involved in diseases based on their underlying biological mechanisms is one of the greatest challenges in therapeutic development today. Gestational diabetes mellitus (GDM) is one of the most common complications during pregnancy, which adversely affects both mothers and offspring during and after pregnancy. We have constructed two datasets of (GDM associated genes from affected mother and placenta to systematically analyze and evaluate their interactions like gene-gene, gene-protein, gene-microRNA (miRNA), gene-transcription factors, and gene-associated diseases to enhance our current knowledge, which may lead to further advancements in disease diagnosis, prognosis, and treatment. The results identify the key genes with respect to maternal dataset as insulin receptor, insulin (INS), leptin (LEP), glucokinase, and hepatocyte nuclear factor 1 alpha, whereas from placenta include insulin-like growth factor 1, growth hormone receptor, and breast cancer anti-estrogen resistance protein 1, which are found to be highly enriched in pancreas, ovary, adipocyte, heart, and placental tissues. The key transcription factors include Sp1 transcription factor, pancreatic and duodenal homeobox 1, and hepatocyte nuclear factor 4 alpha, whereas miRNA includes has-miR-5699-5p and has-miR-3158-3p. The study also reveals that GDM has associations with diseases like type I and II diabetes mellitus, obesity, and preeclampsia. More significantly, we could trace out a significant connection between the key molecules like LEP and placental growth hormone from mother and placental dataset, which plays a critical role in INS secretion, INS signaling, and β-cell dysfunction pathways.

摘要

基于潜在生物学机制来识别疾病相关分子之间的关系是当今治疗开发中最大的挑战之一。妊娠期糖尿病(GDM)是孕期最常见的并发症之一,在孕期及产后对母亲和后代均有不利影响。我们构建了两个数据集,包含来自患病母亲和胎盘的GDM相关基因,以系统分析和评估它们之间的相互作用,如基因-基因、基因-蛋白质、基因-微小RNA(miRNA)、基因-转录因子以及基因相关疾病,以增进我们目前的知识,这可能会在疾病诊断、预后和治疗方面带来进一步进展。结果确定,在母亲数据集中的关键基因有胰岛素受体、胰岛素(INS)、瘦素(LEP)、葡萄糖激酶和肝细胞核因子1α,而在胎盘数据集中的关键基因包括胰岛素样生长因子1、生长激素受体和乳腺癌抗雌激素耐药蛋白1,这些基因在胰腺、卵巢、脂肪细胞、心脏和胎盘组织中高度富集。关键转录因子包括Sp1转录因子、胰腺和十二指肠同源盒1以及肝细胞核因子4α,而miRNA包括has-miR-5699-5p和has-miR-3158-3p。该研究还表明,GDM与I型和II型糖尿病、肥胖症和先兆子痫等疾病有关。更重要的是,我们能够从母亲和胎盘数据集中找出LEP和胎盘生长激素等关键分子之间的重要联系,它们在INS分泌、INS信号传导和β细胞功能障碍途径中起关键作用。

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