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新型甲酰转移酶的结构洞察及其向非核糖体肽合成酶修饰结构域的进化。

Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.

机构信息

Department of Biochemistry , McGill University , Montréal , Québec H3G 0B1 , Canada.

Department of Molecular and Cellular Biology , University of Guelph , Guelph , Ontario N1G 2W1 , Canada.

出版信息

ACS Chem Biol. 2018 Nov 16;13(11):3161-3172. doi: 10.1021/acschembio.8b00739. Epub 2018 Oct 30.

Abstract

Nonribosomal peptide synthetases (NRPSs) increase the chemical diversity of their products by acquiring tailoring domains. Linear gramicidin synthetase starts with a tailoring formylation (F) domain, which likely originated from a sugar formyltransferase (FT) gene. Here, we present studies on an Anoxybacillus kamchatkensis sugar FT representative of the prehorizontal gene transfer FT. Gene cluster analysis reveals that this FT acts on a UDP-sugar in a novel pathway for synthesis of a 7-formamido derivative of CMP-pseudaminic acid. We recapitulate the pathway up to and including the formylation step in vitro, experimentally demonstrating the role of the FT. We also present X-ray crystal structures of the FT alone and with ligands, which unveil contrasts with other structurally characterized sugar FTs and show close structural similarity with the F domain. The structures reveal insights into the adaptations that were needed to co-opt and evolve a sugar FT into a functional and useful NRPS domain.

摘要

非核糖体肽合成酶 (NRPSs) 通过获取修饰结构域来增加其产物的化学多样性。线性短杆菌肽合成酶以修饰甲酰化 (F) 结构域开始,该结构域可能源自糖基甲酰转移酶 (FT) 基因。在这里,我们研究了一种代表预水平基因转移 FT 的 kamchatkensis 属 Anoxybacillus 糖基 FT。基因簇分析表明,该 FT 在一个新颖的途径中作用于 UDP-糖,用于合成 CMP-假氨基糖的 7-甲酰胺衍生物。我们在体外重现了该途径,直至包括甲酰化步骤,实验证明了 FT 的作用。我们还展示了 FT 及其配体的 X 射线晶体结构,这些结构揭示了与其他结构特征糖基 FT 的差异,并与 F 结构域具有密切的结构相似性。这些结构揭示了在共选和进化糖基 FT 成为功能性和有用的 NRPS 结构域时所需的适应机制。

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