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甲酰化结构域:线性短杆菌肽非核糖体生物合成所必需的修饰酶。

Formylation domain: an essential modifying enzyme for the nonribosomal biosynthesis of linear gramicidin.

作者信息

Schoenafinger Georg, Schracke Nadine, Linne Uwe, Marahiel Mohamed A

机构信息

Fachbereich Chemie/Biochemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse, D-35032 Marburg, Germany.

出版信息

J Am Chem Soc. 2006 Jun 14;128(23):7406-7. doi: 10.1021/ja0611240.

Abstract

Formylation is an important part of ribosomal peptide synthesis of prokaryotes. In nonribosomal peptide synthesis, however, N-formylation is rather unusual and therefore so far unexplored. In this work, the first module of the linear gramicidin nonribosomal peptide synthetase, LgrA1, consisting of a hypothetical formylation domain, an adenylation, and a peptidyl carrier protein domain was tested for formyltransferase activity in vitro. We demonstrate here that the putative formylation domain does indeed transfer the formyl group of formyltetrahydrofolate (fH4F) onto the first amino acid valine using both cofactors N10- and N5-fH4F, respectively. Most important, the necessity of the formylated starter unit formyl-valine for the initiation of the gramicidin biosynthesis was tested by elongation assays with the bimodular system from LgrA. By omitting the formyl group donor, no condensation product of valine with the subsequent building block glycine was detected, whereas the dipeptide formyl-valyl-glycine was found when assayed in the presence of either formyl donor. The proven formylation activity of the first domain of LgrA represents a novel tailoring enzyme in nonribosomal peptide synthesis.

摘要

甲酰化是原核生物核糖体肽合成的重要组成部分。然而,在非核糖体肽合成中,N-甲酰化相当罕见,因此迄今为止尚未得到探索。在这项工作中,对线性短杆菌肽非核糖体肽合成酶的第一个模块LgrA1进行了体外甲酰转移酶活性测试,该模块由一个假定的甲酰化结构域、一个腺苷化结构域和一个肽基载体蛋白结构域组成。我们在此证明,假定的甲酰化结构域确实分别使用辅因子N10-和N5-甲酰四氢叶酸(fH4F)将甲酰四氢叶酸的甲酰基转移到第一个氨基酸缬氨酸上。最重要的是,通过使用来自LgrA的双模块系统进行延伸测定,测试了甲酰化起始单元甲酰缬氨酸对短杆菌肽生物合成起始的必要性。通过省略甲酰基供体,未检测到缬氨酸与后续结构单元甘氨酸的缩合产物,而在存在任何一种甲酰供体的情况下进行测定时,发现了二肽甲酰缬氨酰甘氨酸。LgrA第一个结构域已被证实的甲酰化活性代表了非核糖体肽合成中的一种新型修饰酶。

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