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跨学科咨询以弥合公共卫生技术需求与分析开发者之间的差距:否定检测用例

Cross Disciplinary Consultancy to Bridge Public Health Technical Needs and Analytic Developers: Negation Detection Use Case.

作者信息

Conway Mike, Mowery Danielle, Ising Amy, Velupillai Sumithra, Doan Son, Gunn Julia, Donovan Michael, Wiedeman Caleb, Ballester Lance, Soetebier Karl, Tong Catherine, Burkom Howard

机构信息

Department of Biomedical Informatics, University of Utah, Salt Lake City, Utah, United States.

Informatics, Decision-Enhancement, and Analytical Sciences Center (IDEAS 2.0), Veterans Affairs, Salt Lake City Health Care System , Salt Lake City, Utah, United States.

出版信息

Online J Public Health Inform. 2018 Sep 21;10(2):e209. doi: 10.5210/ojphi.v10i2.8944. eCollection 2018.

DOI:10.5210/ojphi.v10i2.8944
PMID:30349627
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6194092/
Abstract

This paper describes a continuing initiative of the International Society for Disease Surveillance designed to bring together public health practitioners and analytics solution developers from both academia and industry. Funded by the Defense Threat Reduction Agency, a series of consultancies have been conducted on a range of topics of pressing concern to public health (e.g. developing methods to enhance prediction of asthma exacerbation, developing tools for asyndromic surveillance from chief complaints). The topic of this final consultancy, conducted at the University of Utah in January 2017, is focused on defining a roadmap for the development of algorithms, tools, and datasets for improving the capabilities of text processing algorithms to identify negated terms (i.e. ) in free-text chief complaints and triage reports.

摘要

本文介绍了国际疾病监测协会的一项持续倡议,旨在将来自学术界和行业的公共卫生从业者与分析解决方案开发者聚集在一起。由国防威胁降低局资助,针对一系列公共卫生领域迫切关注的主题开展了一系列咨询活动(例如,开发增强哮喘恶化预测的方法,开发基于主要症状的症候群监测工具)。2017年1月在犹他大学进行的这最后一次咨询的主题,重点是为算法、工具和数据集的开发制定路线图,以提高文本处理算法识别自由文本主要症状和分诊报告中否定词(即 )的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/55ce0f36794f/ojphi-10-e209-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/ad5f622f9458/ojphi-10-e209-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/8c2df010b543/ojphi-10-e209-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/55ce0f36794f/ojphi-10-e209-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/ad5f622f9458/ojphi-10-e209-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/8c2df010b543/ojphi-10-e209-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ab6/6194092/55ce0f36794f/ojphi-10-e209-g003.jpg

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本文引用的文献

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2
NegAIT: A new parser for medical text simplification using morphological, sentential and double negation.NegAIT:一种使用形态学、句子结构和双重否定进行医学文本简化的新型解析器。
J Biomed Inform. 2017 May;69:55-62. doi: 10.1016/j.jbi.2017.03.014. Epub 2017 Mar 22.
3
Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse.
改进全文搜索引擎:否定检测和家族病史背景对在生物医学数据仓库中识别病例的重要性。
J Am Med Inform Assoc. 2017 May 1;24(3):607-613. doi: 10.1093/jamia/ocw144.
4
Cross-Disciplinary Consultancy to Enhance Predictions of Asthma Exacerbation Risk in Boston.跨学科咨询以增强对波士顿哮喘恶化风险的预测
Online J Public Health Inform. 2016 Dec 28;8(3):e199. doi: 10.5210/ojphi.v8i3.6902. eCollection 2016.
5
The Impact of Law on Syndromic Disease Surveillance Implementation.法律对综合征疾病监测实施的影响。
J Public Health Manag Pract. 2018 Jan/Feb;24(1):9-17. doi: 10.1097/PHH.0000000000000508.
6
Web-based infectious disease surveillance systems and public health perspectives: a systematic review.基于网络的传染病监测系统与公共卫生视角:一项系统综述
BMC Public Health. 2016 Dec 8;16(1):1238. doi: 10.1186/s12889-016-3893-0.
7
Cross-Disciplinary Consultancy to Bridge Public Health Technical Needs and Analytic Developers: Asyndromic Surveillance Use Case.跨学科咨询以弥合公共卫生技术需求与分析开发者之间的差距:症候群监测用例
Online J Public Health Inform. 2015 Dec 30;7(3):e228. doi: 10.5210/ojphi.v7i3.6354. eCollection 2015.
8
Automatic negation detection in narrative pathology reports.自动否定词检测在叙事病理学报告中的应用。
Artif Intell Med. 2015 May;64(1):41-50. doi: 10.1016/j.artmed.2015.03.001. Epub 2015 Mar 24.
9
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AMIA Annu Symp Proc. 2014 Nov 14;2014:534-43. eCollection 2014.
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DEEPEN: A negation detection system for clinical text incorporating dependency relation into NegEx.DEEPEN:一种将依存关系纳入NegEx的临床文本否定检测系统。
J Biomed Inform. 2015 Apr;54:213-9. doi: 10.1016/j.jbi.2015.02.010. Epub 2015 Mar 16.