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生物信息学工具如何引导实验解决明显无限代谢变化的混乱。

How Bioinformatic Tools Guide Experiments To Resolve the Chaos of Apparently Unlimited Metabolic Variation.

机构信息

School of Biosciences and Institute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom

出版信息

J Bacteriol. 2018 Dec 20;201(2). doi: 10.1128/JB.00628-18. Print 2019 Jan 15.

Abstract

Hexuronic acids, oxidation products of common sugars, are widespread in eukaryotic cells. Galacturonic acid is the main carbohydrate component of pectin found in plant cell walls and glucuronic acid is a component of proteoglycans in animals. However, despite their importance as carbohydrate substrates, metabolism of hexuronic acids has long remained a poorly studied corner of the bacterial metabolic map. In the current issue of , Bouvier and coworkers present a detailed analysis of genes involved in hexuronate utilization in various proteobacteria and report the verification of their bioinformatics predictions by carefully designed experiments (J. T. Bouvier et al., J Bacteriol 201:e00431-18, 2019, https://doi.org/10.1128/JB.00431-18). This study provides a solid basis for understanding hexuronate metabolism and its regulation in other bacterial phyla.

摘要

己糖醛酸是常见糖的氧化产物,广泛存在于真核细胞中。半乳糖醛酸是植物细胞壁中果胶的主要碳水化合物成分,而葡萄糖醛酸是动物中蛋白聚糖的成分。然而,尽管它们作为碳水化合物底物很重要,但己糖醛酸的代谢长期以来一直是细菌代谢图谱中一个研究甚少的角落。在本期 中,Bouvier 及其同事对各种变形菌中参与己糖酸盐利用的基因进行了详细分析,并通过精心设计的实验验证了他们的生物信息学预测(J. T. Bouvier 等人,J Bacteriol 201:e00431-18, 2019, https://doi.org/10.1128/JB.00431-18)。这项研究为理解其他细菌门中己糖酸盐代谢及其调控提供了坚实的基础。

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本文引用的文献

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Novel Metabolic Pathways and Regulons for Hexuronate Utilization in Proteobacteria.
J Bacteriol. 2018 Dec 20;201(2). doi: 10.1128/JB.00431-18. Print 2019 Jan 15.
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