Chen Chao, Yang Hongwu, Xuan Jinsong, Cui Qiu, Feng Yingang
Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China.
CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China.
Biomol NMR Assign. 2019 Apr;13(1):97-101. doi: 10.1007/s12104-018-9859-7. Epub 2018 Oct 30.
Cellulosomes are highly efficient multienzyme complexes for lignocellulose degradation secreted by some lignocellulolytic bacteria. Cellulosomes are assembled through protein modules named cohesin and dockerin, and multiple cohesin modules in the scaffold protein generally determine the complexity of the cellulosomes. Some cellulosomal proteins contain multiple dockerin modules, which may generate more complex cellulosomal architectures. Genome mining revealed that cellulosomal proteins containing double dockerin modules and a protease module exist in many cellulosome-producing bacteria, and these proteins together with cellulosomal protease inhibitors were proposed to have regulatory roles. However, the structures and functions of these multiple-dockerin proteins in cellulosome have not been reported before. In this paper, we present the NMR chemical shift assignments of the double-dockerin of a cellulosomal protease from Clostridium thermocellum DSM1313. The secondary structures predicted from the chemical shifts agree with the structural arrangement of the tandem dockerin modules. The chemical shift assignments here provide the basis for the structural and functional studies of multiple-dockerin proteins in future.
纤维小体是由一些木质纤维素分解细菌分泌的用于降解木质纤维素的高效多酶复合物。纤维小体通过名为黏连蛋白和dockerin的蛋白质模块组装而成,支架蛋白中的多个黏连蛋白模块通常决定了纤维小体的复杂性。一些纤维小体蛋白含有多个dockerin模块,这可能会产生更复杂的纤维小体结构。基因组挖掘表明,许多产生纤维小体的细菌中存在含有双dockerin模块和蛋白酶模块的纤维小体蛋白,并且这些蛋白与纤维小体蛋白酶抑制剂一起被认为具有调节作用。然而,这些多dockerin蛋白在纤维小体中的结构和功能此前尚未见报道。在本文中,我们给出了来自嗜热栖热菌DSM1313的一种纤维小体蛋白酶的双dockerin的核磁共振化学位移归属。根据化学位移预测的二级结构与串联dockerin模块的结构排列一致。此处的化学位移归属为未来多dockerin蛋白的结构和功能研究提供了基础。