Research School of Earth Sciences, Australian National University, Canberra, ACT, Australia.
School of Earth and Environment, University of Leeds, Leeds, United Kingdom.
PLoS One. 2018 Oct 31;13(10):e0204625. doi: 10.1371/journal.pone.0204625. eCollection 2018.
The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a "Corrected Version" (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others' dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor-descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as mutual listings between morphospecies and lineages which ease the tracing of their interrelated contents. The elaboration of the original dataset has been captured in a relational database, which can be considered a resource in itself, and, through queries and programming, serves to generate the TimeScale Creator datapacks.
Aze 等人的独特宏观进化数据集已被转移到 TimeScale Creator 可视化平台上,同时尽可能保留其形态种和谱系进化树的原始未经修订的内容。这是一个“更正版本”(而不是修订版),它可以作为一个持续的历史案例,因为它现在可以使用未来的时间尺度进行更新。现在,宏观进化和生物地层学两个社区都拥有一个持久的新生代宏观有孔浮游有孔虫形态种和谱系的系统发育数据库,这些形态种和谱系的图形和内容可以一起可视化。维护这些树的时效性的关键是为地层范围的来源指定时间尺度;这些尺度将范围日期定位在校准系列中。一些范围或其来源已经进行了主要的小修正或修订。谱系和形态种树之间的链接已经引入,以提高树内时间的一致性和透明度。此外,Aze 等人在这里进一步阐述了他们对形态种和谱系概念的双重使用,因为这引起了一些误解。树中显示的特征包括为范围扩展或祖先-后代提议的支持程度的附加类别选择线样式选项;这些已经应用于少数实例中,以鼓励在未来捕获更细微的数据。除了在两棵树上标记生态和形态群外,还可以将属标签附加到形态种树上,以警告多系形态属,并解码谱系代码,以方便识别。然而,鼠标悬停弹出窗口为在树中嵌入支持信息提供了最大的机会。它们包括地层范围及其重新校准步骤的详细信息、相对于标准浮游有孔虫分带的位置以及作为基准的应用,以及形态种和谱系之间的相互列表,这些都便于追踪它们相互关联的内容。原始数据集的详细信息已被捕获到关系数据库中,该数据库本身可以被认为是一种资源,并且可以通过查询和编程为 TimeScale Creator 数据包生成提供服务。