Collins Patrick M, Douangamath Alice, Talon Romain, Dias Alexandre, Brandao-Neto Jose, Krojer Tobias, von Delft Frank
Diamond Light Source, Harwell Science and Innovation Campus, Didcot, United Kingdom.
Structural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Methods Enzymol. 2018;610:251-264. doi: 10.1016/bs.mie.2018.09.027. Epub 2018 Oct 15.
The XChem facility at Diamond Light Source offers fragment screening by X-ray crystallography as a general access user program. The main advantage of X-ray crystallography as a primary fragment screen is that it yields directly the location and pose of the fragment hits, whether within pockets of interest or merely on surface sites: this is the key information for structure-based design and for enabling synthesis of follow-up molecules. Extensive streamlining of the screening experiment at XChem has engendered a very active user program that is generating large amounts of data: in 2017, 36 academic and industry groups generated 35,000 datasets of uniquely soaked crystals. It has also generated a large number of learnings concerning the main remaining bottleneck, namely, obtaining a suitable crystal system that will support a successful fragment screen. Here we discuss the practicalities of generating screen-ready crystals that have useful electron density maps, and how to ensure they will be successfully reproduced and usable at a facility outside the home lab.
位于钻石光源的XChem设施提供通过X射线晶体学进行片段筛选的通用访问用户程序。X射线晶体学作为主要片段筛选方法的主要优势在于,它能直接给出片段命中物的位置和姿态,无论其位于感兴趣的口袋内还是仅在表面位点:这是基于结构设计以及后续分子合成的关键信息。XChem筛选实验的广泛简化催生了一个非常活跃的用户程序,该程序正在生成大量数据:2017年,36个学术和行业团队生成了35000个独特浸泡晶体的数据集。它还产生了大量关于主要剩余瓶颈的经验教训,即获得一个能够支持成功片段筛选的合适晶体系统。在这里,我们讨论生成具有有用电子密度图的适合筛选的晶体的实际操作,以及如何确保它们能在本实验室之外的设施中成功重现并可用。