Smith G M, Yu L P, Domingues D J
Biochemistry. 1987 Apr 21;26(8):2202-7. doi: 10.1021/bi00382a020.
The proteins cytochrome c2, cytochrome c', and ribulosebisphosphate carboxylase/oxygenase from Rhodospirillum rubrum were enriched in 15N by growth of the organism on 15NH4Cl. The proteins were purified to homogeneity and studied by 15N NMR. Longitudinal and transverse relaxation times as well as the nuclear Overhauser effects were determined for various groups of the proteins which vary in molecular weight from 13,000 to 114,000. The values of these parameters for the amide resonances or for groups thought to be rigid were consistent with the molecular weights of the proteins. Relaxation times of the amino-terminal alpha-amino groups and the side chain nitrogen atoms of arginine and lysine were consistent with much more rapid motion. Nitrogen atoms having bound protons were generally found to be decoupled from the protons by chemical exchange. Demonstrable 1H-15N coupling was taken as an indication that exchange was hindered, either by hydrogen bonding interactions or by inaccessibility of the group to solvent. Histidine side chain nitrogen atoms, which experience a large chemical shift upon protonation/deprotonation, were often found to be broadened beyond detectability by chemical exchange and tautomerization. Strategies for improving sensitivity and for obtaining specific peak assignments are also discussed.
通过在15NH4Cl上培养红螺菌,使其细胞色素c2、细胞色素c'和核酮糖二磷酸羧化酶/加氧酶中的蛋白质富含15N。将这些蛋白质纯化至同质,并通过15N核磁共振进行研究。测定了分子量从13,000到114,000不等的蛋白质不同基团的纵向和横向弛豫时间以及核Overhauser效应。这些酰胺共振或被认为是刚性基团的参数值与蛋白质的分子量一致。氨基末端α-氨基以及精氨酸和赖氨酸侧链氮原子的弛豫时间与更快的运动一致。一般发现与质子结合的氮原子通过化学交换与质子解耦。可证明的1H-15N耦合被视为交换受阻的迹象,这要么是由于氢键相互作用,要么是由于基团无法接触溶剂。组氨酸侧链氮原子在质子化/去质子化时会经历较大的化学位移,经常发现其因化学交换和互变异构而变宽至无法检测。还讨论了提高灵敏度和获得特定峰归属的策略。