Suppr超能文献

复杂分子环境中的电子激发:VOTCA-XTP 中的多体格林函数理论

Electronic Excitations in Complex Molecular Environments: Many-Body Green's Functions Theory in VOTCA-XTP.

作者信息

Wehner Jens, Brombacher Lothar, Brown Joshua, Junghans Christoph, Çaylak Onur, Khalak Yuriy, Madhikar Pranav, Tirimbò Gianluca, Baumeier Björn

机构信息

Max Planck Institute for Polymer Research , Ackermannweg 10 , D-55128 Mainz , Germany.

Department of Mathematics and Computer Science & Institute for Complex Molecular Systems , Eindhoven University of Technology , P.O. Box 513, 5600MB Eindhoven , The Netherlands.

出版信息

J Chem Theory Comput. 2018 Dec 11;14(12):6253-6268. doi: 10.1021/acs.jctc.8b00617. Epub 2018 Nov 21.

Abstract

Many-body Green's functions theory within the GW approximation and the Bethe-Salpeter Equation (BSE) is implemented in the open-source VOTCA-XTP software, aiming at the calculation of electronically excited states in complex molecular environments. Based on Gaussian-type atomic orbitals and making use of resolution of identity techniques, the code is designed specifically for nonperiodic systems. Application to a small molecule reference set successfully validates the methodology and its implementation for a variety of excitation types covering an energy range from 2 to 8 eV in single molecules. Further, embedding each GW-BSE calculation into an atomistically resolved surrounding, typically obtained from Molecular Dynamics, accounts for effects originating from local fields and polarization. Using aqueous DNA as a prototypical system, different levels of electrostatic coupling between the regions in this GW-BSE/MM setup are demonstrated. Particular attention is paid to charge-transfer (CT) excitations in adenine base pairs. It is found that their energy is extremely sensitive to the specific environment and to polarization effects. The calculated redshift of the CT excitation energy compared to a nucelobase dimer treated in vacuum is of the order of 1 eV, which matches expectations from experimental data. Predicted lowest CT energies are below that of a single nucleobase excitation, indicating the possibility of an initial (fast) decay of such an UV excited state into a binucleobase CT exciton. The results show that VOTCA-XTP's GW-BSE/MM is a powerful tool to study a wide range of types of electronic excitations in complex molecular environments.

摘要

开源的VOTCA-XTP软件实现了GW近似和贝叶斯-萨尔皮特方程(BSE)框架下的多体格林函数理论,旨在计算复杂分子环境中的电子激发态。基于高斯型原子轨道并利用单位分解技术,该代码专为非周期性系统设计。将其应用于小分子参考集成功验证了该方法及其在单分子中涵盖2至8 eV能量范围的各种激发类型的实现。此外,将每个GW-BSE计算嵌入到通常由分子动力学获得的原子分辨环境中,考虑了源自局部场和极化的效应。以水性DNA作为典型系统,展示了此GW-BSE/MM设置中各区域之间不同程度的静电耦合。特别关注腺嘌呤碱基对中的电荷转移(CT)激发。发现它们的能量对特定环境和极化效应极为敏感。与真空中处理的核碱基二聚体相比,计算得到的CT激发能的红移约为1 eV,这与实验数据的预期相符。预测的最低CT能量低于单个核碱基激发的能量,表明这种紫外激发态可能会初始(快速)衰减为双核碱基CT激子。结果表明,VOTCA-XTP的GW-BSE/MM是研究复杂分子环境中广泛类型电子激发的有力工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9220/6293448/ecdcc5ece8e5/ct-2018-00617d_0001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验