Department of Hepatobiliary Surgery, Affiliated Hospital of Youjiang Medical College for Nationalities, Baise, China.
Clinical Medicine Research Center of Hepatobiliary Diseases, Affiliated Hospital of Youjiang Medical College for Nationalities, Baise, China.
J Cell Physiol. 2019 Jun;234(6):8709-8716. doi: 10.1002/jcp.27530. Epub 2018 Nov 11.
The study aimed to identify the long noncoding RNAs (lncRNAs) biomarkers for occurrence and prognosis of patients with hepatocellular carcinoma (HCC), and simultaneously to investigate the potential role of lncRNAs in the oncogenesis of HCC. The lncRNAs expression data and the corresponding clinical information of HCC samples were extracted from The Cancer Genome Atlas (TCGA) database. The differentially expressed genes and lncRNAs were identified and the correlation networks were constructed. In this study, we identified 212 differentially expressed lncRNAs and 7,577 differentially expressed genes between liver HCC tumor tissues and normal tissue samples. And then, combining with clinical information, a total of 11 lncRNAs and 162 genes as HCC biomarkers were identified by comprehensive bioinformatics analysis. Further, through coexpress network analysis, we confirmed four lncRNAs (lncRNA_ANKRD10.IT1, lncRNA_CTD.2583A14.8, lncRNA_RP11.404P21.3, and lncRNA_RP11.488L18.10), which can serve as prognostic biomarkers for HCC. The four lncRNAs identified in this study may serve as a potential therapy target for HCC.
本研究旨在鉴定肝细胞癌(HCC)患者发生和预后的长非编码 RNA(lncRNA)生物标志物,并同时研究 lncRNA 在 HCC 发生中的潜在作用。从癌症基因组图谱(TCGA)数据库中提取 HCC 样本的 lncRNA 表达数据和相应的临床信息。鉴定差异表达基因和 lncRNA,并构建相关网络。在本研究中,我们在肝癌肿瘤组织和正常组织样本之间鉴定出 212 个差异表达的 lncRNA 和 7577 个差异表达的基因。然后,通过综合生物信息学分析,结合临床信息,共鉴定出 11 个 lncRNA 和 162 个 HCC 生物标志物基因。进一步通过共表达网络分析,我们确认了四个可作为 HCC 预后生物标志物的 lncRNA(lncRNA_ANKRD10.IT1、lncRNA_CTD.2583A14.8、lncRNA_RP11.404P21.3 和 lncRNA_RP11.488L18.10)。本研究中鉴定的四个 lncRNA 可能成为 HCC 的潜在治疗靶点。