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自下而上对自然历史博物馆藏品进行成像:3D打印技术助力利用平板扫描仪对保存于液体中的节肢动物进行成像。

Imaging natural history museum collections from the bottom up: 3D print technology facilitates imaging of fluid-stored arthropods with flatbed scanners.

作者信息

Mendez Patina K, Lee Sangyeon, Venter Chris E

机构信息

130 Mulford Hall #3114, Department of Environmental Science, Policy & Management, University of California, Berkeley, Berkeley, CA 94720-3114, USA.

Department of Mechanical Engineering, University of California, Berkeley, USA.

出版信息

Zookeys. 2018 Nov 5(795):49-65. doi: 10.3897/zookeys.795.28416. eCollection 2018.

Abstract

Availability of 3D-printed laboratory equipment holds promise to improve arthropod digitization efforts. A 3D-printed specimen scanning box was designed to image fluid-based arthropod collections using a consumer-grade flatbed scanner. The design was customized to accommodate double-width microscope slides and printed in both Polylactic Acid (PLA) and nylon (Polyamide). The workflow with two or three technicians imaged Trichoptera lots in batches of six scanning boxes. Individual images were cropped from batch imagess using an R script. PLA and nylon both performed similarly with no noticeable breakdown of the plastic; however, dyed nylon leeched color into the ethanol. The total time for handling, imaging, and cropping was ~8 minutes per vial, including returning material to vials and replacing ethanol. Image quality at 2400 dpi was the best and revealed several diagnostic structures valuable for partial identifications with higher utility if structures of the genitalia were captured; however, lower resolution scans may be adequate for natural history collection imaging. Image quality from this technique is similar to other natural history museum imaging techniques; yet, the scanning approach may have wider applications to morphometrics because of lack of distortion. The approach can also be applied to image vouchering for biomonitoring and other ecological studies.

摘要

3D打印实验室设备的可用性有望改善节肢动物数字化工作。设计了一个3D打印的标本扫描盒,用于使用消费级平板扫描仪对基于液体的节肢动物标本进行成像。该设计经过定制,可容纳双倍宽度的显微镜载玻片,并使用聚乳酸(PLA)和尼龙(聚酰胺)进行打印。由两到三名技术人员组成的工作流程,对毛翅目样本进行成像,每次批量处理六个扫描盒。使用R脚本从批量图像中裁剪出单个图像。PLA和尼龙的表现相似,塑料没有明显损坏;然而,染色尼龙会将颜色渗入乙醇中。每个小瓶的处理、成像和裁剪总时间约为8分钟,包括将材料放回小瓶和更换乙醇。2400 dpi的图像质量最佳,揭示了几个诊断结构,这些结构对于部分鉴定很有价值,如果能捕捉到生殖器结构,则实用性更高;然而,较低分辨率的扫描可能足以用于自然历史标本成像。该技术的图像质量与其他自然历史博物馆成像技术相似;然而,由于没有失真,扫描方法在形态计量学方面可能有更广泛的应用。该方法还可应用于生物监测和其他生态研究的图像凭证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abfb/6232236/4b13bb0b8567/zookeys-795-049-g001.jpg

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