Jiang Yuan, Shen Jinling, Xue Feng, Zhao Lina, Yang Jielin, Shao Jingdong, Zhu Changqing, Su Jing, Chen Yi, Brodsky Michael, Salfinger Yvonne
Shanghai Customs, 13 Zhongshan East 1st Rd, Shanghai 200001, China.
Shanghai Entry-Exit Inspection and Quarantine Bureau, Technical Center of Animal Plant and Food Inspection and Quarantine, 1208 Minsheng Rd, Shanghai 200135, China.
J AOAC Int. 2019 May 1;102(3):842-854. doi: 10.5740/jaoacint.18-0323. Epub 2018 Nov 19.
The gene-based real-time PCR method for identification of is more simple, rapid and accurate than the traditional biochemical method. A performance validation of the Tadpole Real-Time PCR Identification Kit was performed. The assay uses TaqMan Real-time PCR technology to amplify target genes from isolated colonies. Bacterial deoxyribonucleic acid (DNA) from inclusivity and exclusivity organisms cultured on Columbia Blood Agar, Campy-Cefex agar and modified Charcoal Cefoperazone Deoxycholate was extracted and analyzed on three instruments: Applied Biosystems (ABI) 7500 Fast, ABI StepOne Plus and Bio-Rad CFX96. When 57 distinct strains of were tested for inclusivity, all 57 strains produced positive results on the three instruments. In exclusivity testing, all 35 strains of related organisms, including 7 non-target strains and other common species, produced negative results on the three instruments. The Independent Laboratory validation consisting of an inclusivity and exclusivity evaluation for 10 isolates and 10 nontarget isolates also showed 100% expected results on the three instruments. In addition, in robustness testing, small, deliberate changes to the assay parameters, including cell suspension turbidity, heat lysis time, and DNA template volume in the PCR reaction, did not affect the kit performance. Finally, the combined lot-to-lot and stability study on both the ABI 7500 Fast and the ABI StepOne Plus showed that the 11 strains and 5 nontarget strains can be correctly identified by the three independently manufactured, lots and it supported a shelf life of 9 months when stored at -20°C. The Tadpole method offers a rapid, accurate, and robust alternative for identification. Rapid and accurate method to identify , which has a good robustness and high stability. It is flexible and offers the advantages of reduced labor and time saving.
基于基因的实时荧光定量PCR鉴定方法比传统生化方法更简单、快速和准确。对蝌蚪实时荧光定量PCR鉴定试剂盒进行了性能验证。该检测方法采用TaqMan实时荧光定量PCR技术从分离的菌落中扩增目标基因。从在哥伦比亚血琼脂、弯曲杆菌-头孢克肟琼脂和改良的炭头孢哌酮脱氧胆酸盐培养基上培养的代表性和排他性菌株中提取细菌脱氧核糖核酸(DNA),并在三种仪器上进行分析:应用生物系统公司(ABI)7500 Fast、ABI StepOne Plus和伯乐CFX96。当对57株不同的目标菌株进行代表性检测时,所有57株菌株在这三种仪器上均产生阳性结果。在排他性检测中,所有35株相关菌株,包括7株非目标菌株和其他常见菌种,在这三种仪器上均产生阴性结果。由10株目标菌株和10株非目标菌株的代表性和排他性评估组成的独立实验室验证在这三种仪器上也显示出100%的预期结果。此外,在稳健性测试中,对检测参数进行小的、有意的改变,包括细胞悬液浊度、热裂解时间和PCR反应中的DNA模板体积,均不影响试剂盒性能。最后,对ABI 7500 Fast和ABI StepOne Plus进行的批次间和稳定性联合研究表明,11株目标菌株和5株非目标菌株可通过三个独立生产的批次正确鉴定,并且支持在-20°C下储存9个月的保质期。蝌蚪法为目标菌株鉴定提供了一种快速、准确且稳健的替代方法。一种快速准确的目标菌株鉴定方法,具有良好的稳健性和高稳定性。它灵活且具有减少劳动力和节省时间的优点。