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SHMT1、MAZ、ERG和L3MBTL3基因多态性与多发性硬化易感性的关联

Association of SHMT1, MAZ, ERG, and L3MBTL3 Gene Polymorphisms with Susceptibility to Multiple Sclerosis.

作者信息

Nazari Mehrabani Seyede Zahra, Shushizadeh Mohammad Hossein, Abazari Mohammad Foad, Nouri Aleagha Maryam, Ardalan Abbas, Abdollahzadeh Rasoul, Azarnezhad Asaad

机构信息

Department of Molecular Genetics, Islamic Azad University, East Tehran branch, Tehran, Iran.

Doctor of Clinical Lab Science, Pasteur Medical Lab Shush Danial Iran, Dezful Medical University, Dezful, Iran.

出版信息

Biochem Genet. 2019 Jun;57(3):355-370. doi: 10.1007/s10528-018-9894-1. Epub 2018 Nov 19.

Abstract

Multiple sclerosis (MS) is the most common inflammatory and chronic disease of the central nervous system (CNS). A complex interaction between genetic, environmental, and epigenetic factors is involved in the pathogenesis of MS. With the advancement of GWAS, various variants associated with MS have been identified. This study aimed to evaluate the association of single-nucleotide polymorphisms (SNPs) rs4925166 and rs1979277 in the SHMT1, MAZ rs34286592, ERG rs2836425, and L3MBTL3 rs4364506 with MS. In this case-control study, the association of five SNPs in SHMT1, MAZ, ERG, and L3MBTL3 genes with relapsing-remitting MS (RR-MS) was investigated in 190 patients and 200 healthy individuals. Four SNPs including SHMT1 rs4925166, SHMT1 rs1979277, MAZ rs34286592, and L3MBTL3 rs4364506 were genotyped using PCR-RFLP and genotyping of ERG rs2836425 was performed by tetra-primer ARMS PCR. Our findings showed a significant difference in the allelic frequencies for the four SNPs of SHMT1 rs4925166, SHMT1 rs1979277, MAZ rs34286592, and ERG rs2836425, while there were no differences in the allele and genotype frequencies for L3MBTL3 rs4364506. These significant associations were observed for the following genotypes: TT and GG genotypes of SHMT1 rs4925166 (OR 0.47 and 1.90, respectively) genotype GG of SHMT1 rs1979277 (OR 0.63), genotype GG of MAZ rs34286592 (OR 0.61), TC and CC genotypes of ERG rs2836425 (OR 1.89 and 0.50, respectively). Our study highlighted that people who are carrying genotypes including GG (SHMT1 rs4925166) and TC (ERG rs2836425) have the highest susceptibility chance for MS, respectively. However, genotypes TT (SHMT1 rs4925166), CC (ERG rs2836425), GG (MAZ rs34286592), and GG (SHMT1 rs1979277) had the highest negative association (protective effect) with MS, respectively. L3MBTL3 rs4364506 was found neither as a predisposing nor a protective variant.

摘要

多发性硬化症(MS)是中枢神经系统(CNS)最常见的炎性慢性疾病。MS的发病机制涉及遗传、环境和表观遗传因素之间的复杂相互作用。随着全基因组关联研究(GWAS)的进展,已鉴定出与MS相关的各种变异。本研究旨在评估丝氨酸羟甲基转移酶1(SHMT1)中的单核苷酸多态性(SNP)rs4925166和rs1979277、锌指蛋白MAZ rs34286592、ETS转录因子ERG rs2836425以及L3MBTL3 rs4364506与MS的关联。在这项病例对照研究中,对190例复发缓解型MS(RR-MS)患者和200名健康个体进行了SHMT1、MAZ、ERG和L3MBTL3基因中五个SNP与RR-MS关联的研究。采用聚合酶链反应-限制性片段长度多态性(PCR-RFLP)对包括SHMT1 rs4925166、SHMT1 rs1979277、MAZ rs34286592和L3MBTL3 rs4364506在内的四个SNP进行基因分型,采用四引物扩增阻滞突变系统PCR(tetra-primer ARMS PCR)对ERG rs2836425进行基因分型。我们的研究结果显示,SHMT1 rs4925166、SHMT1 rs1979277、MAZ rs34286592和ERG rs2836425这四个SNP的等位基因频率存在显著差异,而L3MBTL3 rs4364506的等位基因和基因型频率没有差异。在以下基因型中观察到这些显著关联:SHMT1 rs4925166的TT和GG基因型(优势比分别为0.47和1.90)、SHMT1 rs1979277的GG基因型(优势比为0.63)、MAZ rs34286592的GG基因型(优势比为0.61)、ERG rs2836425的TC和CC基因型(优势比分别为1.89和0.50)。我们的研究强调,携带GG(SHMT1 rs4925166)和TC(ERG rs2836425)基因型的人分别患MS的易感性最高。然而,TT(SHMT1 rs4925166)、CC(ERG rs2836425)、GG(MAZ rs34286592)和GG(SHMT1 rs1979277)基因型与MS的负相关性(保护作用)分别最高。未发现L3MBTL3 rs4364506是易感性或保护性变异。

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