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抑郁中的表观遗传离群特征:对同卵双胞胎的全基因组 DNA 甲基化分析。

Epigenetic outlier profiles in depression: A genome-wide DNA methylation analysis of monozygotic twins.

机构信息

Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia and Institut de Biomedicina (IBUB), Universitat de Barcelona, Barcelona, Spain.

Centro de Investigaciones Biomédicas en Red de Salud Mental (CIBERSAM), Instituto de Salud Carlos III, Madrid, Spain.

出版信息

PLoS One. 2018 Nov 20;13(11):e0207754. doi: 10.1371/journal.pone.0207754. eCollection 2018.

Abstract

Recent discoveries highlight the importance of stochastic epigenetic changes, as indexed by epigenetic outlier DNA methylation signatures, as a valuable tool to understand aberrant cell function and subsequent human pathology. There is evidence of such changes in different complex disorders as diverse as cancer, obesity and, to a lesser extent, depression. The current study was aimed at identifying outlying DNA methylation signatures of depressive psychopathology. Here, genome-wide DNA methylation levels were measured (by means of Illumina Infinium HumanMethylation450 Beadchip) in peripheral blood of thirty-four monozygotic twins informative for depressive psychopathology (lifetime DSM-IV diagnoses). This dataset was explored to identify outlying epigenetic signatures of depression, operationalized as extreme hyper- or hypo-methylation in affected co-twins from discordant pairs that is not observed across the rest of the study sample. After adjusting for blood cell count, there were thirteen CpG sites across which depressed co-twins from the discordant pairs exhibited outlying DNA methylation signatures. None of them exhibited a methylation outlier profile in the concordant and healthy pairs, and some of these loci spanned genes previously associated with neuropsychiatric phenotypes, such as GHSR and KCNQ1. This exploratory study provides preliminary proof-of-concept validation that epigenetic outlier profiles derived from genome-wide DNA methylation data may be related to depression risk.

摘要

最近的发现强调了随机表观遗传变化的重要性,这些变化由表观遗传异常 DNA 甲基化特征来表示,是了解异常细胞功能和随后的人类病理学的有价值的工具。在不同的复杂疾病中都有这种变化的证据,如癌症、肥胖症,在较小程度上还有抑郁症。本研究旨在确定抑郁性精神病理学的异常 DNA 甲基化特征。在这里,通过 Illumina Infinium HumanMethylation450 Beadchip 测量了外周血中的全基因组 DNA 甲基化水平(由三十四个对抑郁性精神病理学有信息的同卵双胞胎提供)。对该数据集进行了探索,以确定抑郁的异常表观遗传特征,即表现在来自不一致对的受影响的同卵双胞胎中的极端高或低甲基化,而在研究样本的其余部分中未观察到这种现象。在调整血细胞计数后,有 13 个 CpG 位点跨越这些来自不一致对的受影响的同卵双胞胎表现出异常的 DNA 甲基化特征。在一致和健康的双胞胎中,没有一个表现出甲基化异常的特征,其中一些基因座跨越了先前与神经精神表型相关的基因,如 GHSR 和 KCNQ1。这项探索性研究初步证明了从全基因组 DNA 甲基化数据中得出的表观遗传异常特征可能与抑郁症风险有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/996c/6245788/47a64141b6ea/pone.0207754.g001.jpg

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