Yu Jun
CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
University of Chinese Academy of Sciences, Beijing 100049, China.
Yi Chuan. 2018 Nov 20;40(11):929-937. doi: 10.16288/j.yczz.18-179.
The DNA sequencing technology invented in 1970's has been a leading tool for genomics and its sequel ─ precision medicine. The needs for advancement of the DNA sequencing technology comes from increasing resolutions in cellular and molecular studies, not only DNA or cDNA sequences but also their covalent modifications, such as various kinds of DNA or RNA methylations. Sequencing single RNA molecules directly without conversion into cDNAs appears to be the last generation of nucleotide sequencers. Some cutting-edge technological elements are clearly expected for the ultimate design of nucleotide sequencers, which must include, but not limited to, nanopores, nanofabrication, surface- or tip-enhanced Raman spectrometry, single-molecule photonics and plasmonics, artificial-intelligence based data analysis tools. The complexity of biological systems is also calling for new syntheses, frameworks, paradigms and more concerted efforts and projects internationally. Here we discuss possible roles and capacities of such technical elements for the fourth-generation nucleotide sequencers in details.
20世纪70年代发明的DNA测序技术一直是基因组学及其后续——精准医学的主要工具。DNA测序技术进步的需求源于细胞和分子研究中不断提高的分辨率,不仅包括DNA或cDNA序列,还包括它们的共价修饰,如各种DNA或RNA甲基化。直接对单个RNA分子进行测序而不转化为cDNA似乎是核苷酸测序仪的最后一代。对于核苷酸测序仪的最终设计,显然需要一些前沿技术元素,这些元素必须包括但不限于纳米孔、纳米制造、表面或尖端增强拉曼光谱、单分子光子学和等离子体学、基于人工智能的数据分析工具。生物系统的复杂性也在呼吁新的合成方法、框架、范式以及国际上更协调一致的努力和项目。在此,我们详细讨论这些技术元素在第四代核苷酸测序仪中可能发挥的作用和能力。