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二醇自由基脱水的类似漫游机制。

Roaming-like Mechanism for Dehydration of Diol Radicals.

作者信息

Asatryan Rubik, Pal Yudhajit, Hachmann Johannes, Ruckenstein Eli

机构信息

Department of Chemical and Biological Engineering , University at Buffalo, The State University of New York , Buffalo , New York 14260 , United States.

Computational and Data-Enabled Science and Engineering Graduate Program , University at Buffalo, The State University of New York , Buffalo , New York 14260 , United States.

出版信息

J Phys Chem A. 2018 Dec 27;122(51):9738-9754. doi: 10.1021/acs.jpca.8b08690. Epub 2018 Dec 11.

DOI:10.1021/acs.jpca.8b08690
PMID:30484647
Abstract

Diol radicals (DRs) are important intermediates in biocatalysis, atmospheric chemistry, and biomass combustion. They are particularly generated from photolysis of halogenated diols and addition of hydroxyl radical to a double bond of unsaturated alcohols, such as lignols. The energized DRs further isomerize/decompose to form products, including water. Aqueous-phase dehydration in radiolytic and biomimetic systems typically occurs at low temperatures, with or without catalysis, whereas the gas-phase dehydration is usually considered energetically unfavorable. In the present study, we propose a new low-energy, roaming-like mechanism based on a detailed dispersion-corrected DFT and ab initio level analysis of the gas-phase dehydration of DRs obtained from the combination of OH radicals with allyl alcohol (AA, CH═CHCHOH)-the simplest relevant model of the unsaturated alcohols. The roaming pathways involve a nearly dissociated OH-group, which subsequently abstracts an H atom of the remaining fragment to form water and [CHO] radical via a transition state (TS) with energy close to the C-O bond fission asymptote. Two types of roaming-like first-order saddle points (SP) are identified for unimolecular dehydration of 1,2- and 1,3-DR radical adducts involving either both hydroxyl groups of diol radicals to generate an oxygen-centered radical, or β-OH group and a skeletal α-hydrogen atom of the 1,2-DR to form a resonantly stabilized hydroxyallyl radical. Two higher energy conventional (tight) transition states, along with the pathways to 1,2-OH-migration, as well as direct H-abstraction, are also identified and analyzed. Most of the traditional density functional theory methods that have been successfully employed in the literature to locate so-far-known roaming SPs were also able to identify the new mechanism, in accord with dispersion-corrected double hybrid B2PLYP-D3(BJ) and mPW2PLYPD methods involving MP2-correlation corrections. However, the MP2 method itself failed to locate any of them, which seems to be typical for MP2 method for loose TS structures, confirmed here for a flat region of PES connecting direct and roaming saddle points. However, MP2 method correctly locates an identical roaming SP for a larger p-coumaryl alcohol model involving hydroxyphenyl substituent at Cγ atom of AA. Two types of interfragmental interactions are identified that stabilize the roaming SPs: (a) H-bonding of the leaving OH radical either with the H atom of the remaining OH group, or with π-cloud of the double bond; (b) direct interaction of π-electrons with the lone-pair electrons of the heteroatom in the leaving OH group through the TS-ring. The alternative TSs are qualitatively characterized by "collinearity" angle of the OH radical attack on the O-H/C-H bonds of the substrate in abstraction-like O-H-O geometry, attributed to the improved orbital overlaps. The proposed mechanism presents broader implications to signify, particularly, a larger role in atmospheric and combustion processes, especially biomass pyrolysis.

摘要

二醇自由基(DRs)是生物催化、大气化学和生物质燃烧中的重要中间体。它们特别由卤代二醇的光解以及羟基自由基加成到不饱和醇(如木质醇)的双键上产生。激发态的DRs进一步异构化/分解形成产物,包括水。辐射分解和仿生体系中的水相脱水通常在低温下发生,有或没有催化作用,而气相脱水通常被认为在能量上是不利的。在本研究中,我们基于对由羟基自由基与烯丙醇(AA,CH═CHCHOH)——不饱和醇最简单的相关模型——结合得到的DRs气相脱水的详细色散校正密度泛函理论(DFT)和从头算水平分析,提出了一种新的低能量、类似漫游的机制。漫游途径涉及一个几乎解离的OH基团,随后它夺取剩余片段的一个H原子,通过一个能量接近C - O键断裂渐近线的过渡态(TS)形成水和[CHO]自由基。对于1,2 - 和1,3 - DR自由基加合物的单分子脱水,确定了两种类型的类似漫游的一级鞍点(SP),涉及二醇自由基的两个羟基以生成一个氧中心自由基,或者1,2 - DR的β - OH基团和骨架α - 氢原子以形成一个共振稳定的羟基烯丙基自由基。还确定并分析了两个能量较高的传统(紧密)过渡态,以及1,2 - OH迁移途径和直接H夺取途径。文献中成功用于定位迄今已知漫游SP的大多数传统密度泛函理论方法,也能够识别这种新机制,这与涉及MP2相关校正的色散校正双杂化B2PLYP - D3(BJ)和mPW2PLYPD方法一致。然而,MP2方法本身未能定位到任何一个,这似乎是MP2方法对于松散TS结构的典型情况,在此通过连接直接和漫游鞍点的势能面(PES)的平坦区域得到证实。然而,对于一个在AA的Cγ原子上含有羟基苯基取代基的较大对香豆醇模型,MP2方法正确地定位了一个相同的漫游SP。确定了两种稳定漫游SP的片段间相互作用:(a)离去的OH自由基与剩余OH基团的H原子或双键的π - 云之间的氢键;(b)π - 电子通过TS环与离去OH基团中杂原子上的孤对电子的直接相互作用。替代的TS在定性上以类似抽象的O - H - O几何结构中OH自由基对底物的O - H/C - H键的攻击角度的“共线性”为特征,这归因于轨道重叠的改善。所提出的机制具有更广泛的意义,特别是在大气和燃烧过程中,尤其是生物质热解中发挥更大作用。

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