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三角形 DNA 折纸镶嵌。

Triangular DNA Origami Tilings.

机构信息

Bioengineering , California Institute of Technology , Pasadena , California 91125 , United States.

Biology , California Institute of Technology , Pasadena , California 91125 , United States.

出版信息

J Am Chem Soc. 2018 Dec 19;140(50):17361-17364. doi: 10.1021/jacs.8b10609. Epub 2018 Dec 4.

Abstract

DNA origami tilings provide methods for creating complex molecular patterns and shapes using flat DNA origami structures as building blocks. Square tiles have been developed to construct micrometer-scale arrays and to generate patterns using stochastic or deterministic strategies. Here we show triangular tiles as a complementary approach for enriching the design space of DNA tilings and for extending the shape of the self-assembled arrays from 2D to 3D. We introduce a computational approach for maximizing binding specificity in a fully symmetric tile design, with which we construct a 20-tile structure resembling a rhombic triacontahedron. We demonstrate controlled transition between 3D and 2D structures using simple methods including tile concentration, magnesium, and fold symmetry in tile edge design. Using these approaches, we construct 2D arrays with unbounded and designed sizes. The programmability of the edge design and the flexibility of the structure make the triangular DNA origami tile an ideal building block for complex self-assembly and reconfiguration in artificial molecular machines and fabricated nanodevices.

摘要

DNA 折纸拼贴提供了一种使用平面 DNA 折纸结构作为构建块来创建复杂分子图案和形状的方法。已经开发出方形瓷砖来构建微米级的阵列,并使用随机或确定性策略生成图案。在这里,我们展示了三角形瓷砖作为一种补充方法,用于丰富 DNA 拼贴的设计空间,并将自组装阵列的形状从 2D 扩展到 3D。我们引入了一种计算方法,用于最大化完全对称瓷砖设计中的结合特异性,我们使用该方法构建了一个 20 块瓷砖结构,类似于菱形三十面体。我们使用简单的方法展示了 3D 和 2D 结构之间的可控转变,包括瓷砖浓度、镁和瓷砖边缘设计中的折叠对称性。使用这些方法,我们构建了具有无界和设计尺寸的 2D 阵列。边缘设计的可编程性和结构的灵活性使三角形 DNA 折纸瓷砖成为复杂自组装和在人工分子机器和制造纳米器件中重新配置的理想构建块。

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