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动力学同位素效应揭示亚磷酸脱氢酶催化的磷酰基转移的缔合过渡态。

O Kinetic Isotope Effects Reveal an Associative Transition State for Phosphite Dehydrogenase Catalyzed Phosphoryl Transfer.

机构信息

Department of Chemistry , University of Illinois at Urbana-Champaign , 600 South Mathews Avenue , Urbana , Illinois 61801 , United States.

Carl R. Woese Institute for Genomic Biology , University of Illinois at Urbana-Champaign , 1206 West Gregory Drive , Urbana , Illinois 61801 , United States.

出版信息

J Am Chem Soc. 2018 Dec 26;140(51):17820-17824. doi: 10.1021/jacs.8b06301. Epub 2018 Dec 12.

Abstract

Phosphite dehydrogenase (PTDH) catalyzes an unusual phosphoryl transfer reaction in which water displaces a hydride leaving group. Despite extensive effort, it remains unclear whether PTDH catalysis proceeds via an associative or dissociative mechanism. Here, primary H and secondary O kinetic isotope effects (KIEs) were determined and used together with computation to characterize the transition state (TS) catalyzed by a thermostable PTDH (17X-PTDH). The large, normal O KIEs suggest an associative mechanism. Various transition state structures were computed within a model of the enzyme active site and H and O KIEs were predicted to evaluate the accuracy of each TS. This analysis suggests that 17X-PTDH catalyzes an associative process with little leaving group displacement and extensive nucleophilic participation. This tight TS is likely a consequence of the extremely poor leaving group requiring significant P-O bond formation to expel the hydride. This finding contrasts with the dissociative TSs in most phosphoryl transfer reactions from phosphate mono- and diesters.

摘要

亚磷酸盐脱氢酶(PTDH)催化一个不寻常的磷酸转移反应,其中水取代了一个氢化物离去基团。尽管进行了广泛的研究,但 PTDH 催化反应是通过缔合机制还是解离机制进行仍然不清楚。在这里,确定了初级 H 和次级 O 动力学同位素效应(KIE),并将其与计算结合使用,以描述热稳定 PTDH(17X-PTDH)催化的过渡态(TS)。大的、正常的 O KIE 表明存在缔合机制。在酶活性位点模型内计算了各种过渡态结构,并预测了 H 和 O KIE 以评估每个 TS 的准确性。该分析表明,17X-PTDH 催化一个具有少量离去基团位移和广泛亲核参与的缔合过程。这种紧密的 TS 可能是由于离去基团非常差,需要形成显著的 P-O 键以排出氢化物。这一发现与大多数从磷酸单酯和二酯进行的磷酸转移反应的解离 TS 形成对比。

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